Locus 8551

Sequence ID X_DroMel_CAF1
Location 21,177,584 – 21,177,676
Length 92
Max. P 0.925271
window14070

overview

Window 0

Location 21,177,584 – 21,177,676
Length 92
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 71.31
Mean single sequence MFE -18.34
Consensus MFE -9.75
Energy contribution -11.50
Covariance contribution 1.75
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 1.17
SVM RNA-class probability 0.925271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21177584 92 + 22224390
UGCAAAUUGCAAACAAACCGAAUCGGCAACCGUUCGAGCAAAACUGUUAAAUGCGGUUAUGCAAUAAAAAAAAAAGCACGGCAAUAGGUUUC-------------
(((....(((........(((((.(....).))))).(((.((((((.....)))))).))).............)))..))).........------------- ( -22.70)
>DroSec_CAF1 3813 81 + 1
UGCAAAUUGCAAACAAACCGAAUCGGCAACCGUUCGAGCAAAACUGUUAAAUGCGGUUAUGCAAUAAAAAAAAAC-----------AGCUUC-------------
(((.....))).......(((((.(....).))))).(((.((((((.....)))))).))).............-----------......------------- ( -18.70)
>DroEre_CAF1 3907 101 + 1
UGCAAAUUGCAAACAAACCGAAUCGGCAACCGUUCGAGCAAAACUGUUAAAUGCGGUUAUGCAAUAAAAAAG----CACGGCAAUAGGUUUCGUUUGGGCAAGGA
......((((...(((((.(((((.((((((((...((((....))))....)))))).(((.........)----))..))....))))).))))).))))... ( -26.50)
>DroAna_CAF1 2936 73 + 1
UGCAAAUUGCAAACAAAC------------CGUUCGGCUAAAACUGUUAAAUU--AUUAUGCAACAAAAAAAAU--CACGAGAAUA----UCG------------
......(((((.......------------....(((......))).......--....)))))..........--..(((.....----)))------------ (  -5.45)
>consensus
UGCAAAUUGCAAACAAACCGAAUCGGCAACCGUUCGAGCAAAACUGUUAAAUGCGGUUAUGCAAUAAAAAAAAA__CACGGCAAUAGGUUUC_____________
(((((((((((.......(((((.(....).)))))((((....))))...))))))).)))).......................................... ( -9.75 = -11.50 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:05 2006