Locus 8550

Sequence ID X_DroMel_CAF1
Location 21,171,097 – 21,171,216
Length 119
Max. P 0.510545
window14069

overview

Window 9

Location 21,171,097 – 21,171,216
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 77.89
Mean single sequence MFE -35.10
Consensus MFE -26.19
Energy contribution -25.42
Covariance contribution -0.77
Combinations/Pair 1.38
Mean z-score -0.86
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.510545
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21171097 119 + 22224390
UCAAGGGCAAGAAGGUGCGCGGUCGUCUGUAUCCAUGGGGCGUGGUCGAGGUAGAGAAUCCCGAUCACUGCGACUUCAUCAAGCUGCGCACGAUGCUCAUGUAAGUGAAGCAAAUAUUC
..............(((((((((..(((((....)))))(((((((((.((........))))))))).))...........)))))))))..(((((((....))).))))....... ( -36.30)
>DroPse_CAF1 885 108 + 1
UCAAGGGUAAAAAGGUUCGCGGCCGCCUCUAUCCCUGGGGCGUGGUCGAGGUAGAGAAUCCCGAUCACUGUGAUUUCAUAAAGCUGCGCACAAUGCUAAUGUGAGUAG-----------
(((..((((.....((.((((((.(((((.......)))))(((((((.((........)))))))))((((....))))..)))))).))..))))....)))....----------- ( -36.70)
>DroGri_CAF1 857 100 + 1
UUAAAGGUAAAAAAGUGCGCGGCCGCCUUUAUCCAUGGGGCGUCGUUGAGGUUGAGAAUCCCGACCAUUGUGACUUUAUCAAGCUGCGCACCAUGCUGAU-------------------
.....((((.....(((((((((.(((((.......)))))((((..(.(((((.......))))).)..))))........)))))))))..))))...------------------- ( -33.60)
>DroWil_CAF1 1045 119 + 1
UCAAGGGCAAGAAAGUCCGCGGCCGUUUAUAUCCAUGGGGUGUGGUCGAAGUAGAGAAUCCAGAUCAUUGUGAUUUCAUUAAGCUGCGUACCAUGUUGAUGUAAGUUUCCAAAAUGACG
(((.((((......))))..((...(((((((((((((..((..((..((...((((.(((((....))).)))))).))..))..))..)))))..))))))))...))....))).. ( -29.40)
>DroAna_CAF1 867 114 + 1
UCAAGGGCAAGAAGGUUCGCGGUCGCCUCUAUCCAUGGGGCGUUGUCGAGGUGGAGAAUCCCGACCACUGCGACUUCAUCAAGCUGCGCACCAUGCUGAUGUAAGG-----AUAUAUUA
.....((((....(((.((((((((((((.......))))))..((((.(((((.(.....)..))))).))))........)))))).))).))))((((((...-----.)))))). ( -37.90)
>DroPer_CAF1 882 108 + 1
UCAAGGGUAAAAAGGUUCGCGGCCGCCUCUAUCCCUGGGGCGUGGUCGAGGUGGAGAAUCCCGAUCACUGUGAUUUCAUAAAGCUGCGCACAAUGCUAAUGUGAGUAG-----------
(((..((((.....((.((((((.(((((.......)))))(((((((.((........)))))))))((((....))))..)))))).))..))))....)))....----------- ( -36.70)
>consensus
UCAAGGGCAAAAAGGUUCGCGGCCGCCUCUAUCCAUGGGGCGUGGUCGAGGUAGAGAAUCCCGAUCACUGUGACUUCAUCAAGCUGCGCACCAUGCUGAUGUAAGU_____________
.....((((.....((.((((((.(((((.......)))))(((((((.((........)))))))))..............)))))).))..))))...................... (-26.19 = -25.42 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:04 2006