| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,169,807 – 21,169,902 |
| Length | 95 |
| Max. P | 0.998413 |
| Location | 21,169,807 – 21,169,902 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.43 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -13.36 |
| Energy contribution | -14.37 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.67 |
| SVM decision value | 3.09 |
| SVM RNA-class probability | 0.998413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21169807 95 + 22224390 UAUCGUCAGUCUGCAUUGCAUGGUUUUAUAGCUUAAUCAGCAUAGGCUGACCCACUU----------------A--AUUAUU--CGCAUAUGUAUUCAUAUGUAUAGAACACAAU ..(((((((((((...(((.(((((.........)))))))))))))))))......----------------.--......--.(((((((....)))))))...))....... ( -23.80) >DroSec_CAF1 8277 102 + 1 UAUCGUCAGUCUGCAUUGCAUGGUUUUAUAGCUUAAUCAGCAUAGGCUGACCCACUUAGCACACAAUGUUAUUA--AUUAUU--CGCAUAUA----CAUAUG-----AACGCAAU ....(((((((((...(((.(((((.........))))))))))))))))).....(((((.....)))))...--......--..((((..----..))))-----........ ( -18.70) >DroYak_CAF1 7418 101 + 1 UAUCAACAGCCUGCAUUGCG-GACUUAAUAGCAUAAUCAGCAUAGGCUGACCCACUUUA-ACACACU---UUCAAUAAUUUUAAUGCAUAUG----UGUAUA-----AACACAAU ......(((((((...(((.-((.(((......))))).))))))))))..........-.......---....................((----(((...-----.))))).. ( -17.40) >consensus UAUCGUCAGUCUGCAUUGCAUGGUUUUAUAGCUUAAUCAGCAUAGGCUGACCCACUU___ACACA_U____U_A__AUUAUU__CGCAUAUG____CAUAUG_____AACACAAU ....(((((((((...(((.(((((.........)))))))))))))))))...................................(((((......)))))............. (-13.36 = -14.37 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:03 2006