Locus 8548

Sequence ID X_DroMel_CAF1
Location 21,167,354 – 21,167,450
Length 96
Max. P 0.786273
window14067

overview

Window 7

Location 21,167,354 – 21,167,450
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -32.62
Consensus MFE -23.34
Energy contribution -24.15
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.72
SVM decision value 0.57
SVM RNA-class probability 0.786273
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21167354 96 + 22224390
--ACGCUUCUAACAAUU---------GCGUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUUGUGUGUCUGGCCUU
--.(((.(((((.....---------.........-))))).)))(((((.(((((....)))))((((((..(((((((.......)))))))..))))))))))). ( -33.44)
>DroVir_CAF1 6404 97 + 1
CUACAG-UCUU-------AUAGAU--AUUUUUUCU-GCAGGUGCGCGGCUUUGUUGGCUGCCACAAGAUGCUGGAGCGUGACAUCUAUUUGCUCGUCUGUUUGGCCUU
.....(-((..-------((((((--.........-(((.(((.((((((.....)))))))))....)))..(((((...........)))))))))))..)))... ( -30.70)
>DroSec_CAF1 5829 96 + 1
--ACAUUUCUAACAAUU---------GCGUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU
--...............---------.(((.((..-...)).)))(((((.(((((....)))))((((((..(((((((.......)))))))..))))))))))). ( -33.70)
>DroSim_CAF1 5747 96 + 1
--ACAUUUCUAACAAUU---------GCCUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU
--.....(((.((((..---------(((((.(((-....))).))))).)))).))).((((...(((((..(((((((.......)))))))..)))))))))... ( -34.40)
>DroEre_CAF1 4852 103 + 1
--ACAU-CCUAAAAAUUCC-GUUCAUGCGUUCAUU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUGGUGUGUCUGGCCUU
--.((.-(((((((....(-((....)))....))-))))))).((((((.(((((....)))))((((((...((((((.......))))))...)))))))))))) ( -35.20)
>DroYak_CAF1 4838 102 + 1
--ACAU-CCUUACAAUU---GGAAAUGCGUUCAUUUUUAGGUGCGAGGCUUUGUGGGAUGCCACAAAAUGCUGGAGCGGGACAUUUACCUACUCGUGUGUCUGGCCUU
--....-(((..((.((---(((((((....))))))))).))..))).(((((((....))))))).....((.((.((((((............)))))).)))). ( -28.30)
>consensus
__ACAU_UCUAACAAUU_________GCGUUCCAU_UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU
............................................((((((.(((((....)))))((((((..(((((((.......)))))))..)))))))))))) (-23.34 = -24.15 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:02 2006