Locus 8547

Sequence ID X_DroMel_CAF1
Location 21,165,276 – 21,165,394
Length 118
Max. P 0.963369
window14066

overview

Window 6

Location 21,165,276 – 21,165,394
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.82
Mean single sequence MFE -43.72
Consensus MFE -29.18
Energy contribution -28.60
Covariance contribution -0.58
Combinations/Pair 1.34
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value 1.55
SVM RNA-class probability 0.963369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21165276 118 + 22224390
GACGUUGCGAAAGGGCGAGUUCUGGACCUGCAGCCACUGUACGCUCAAGAACUCGCUGCACUCGCCGGUCUGCAGUGCCUGCAAGUCCCACCGCCAGCCGCAGCUCUCGAUGGCCAUG--
((.((((((....((((.((...((((.(((((.(((((((.(((...((...........))...))).))))))).))))).)))).))))))...))))))))............-- ( -44.40)
>DroVir_CAF1 4446 108 + 1
GACGCUGCGCAAGGGCGAGUUCUGGACCUGCAGCCAUUGCACGCUCAAGAAUUCGCUGUCGGUGGGCCUGUGCAGUGCCUGCAAAUCGAUGCGUCUG------CUGC------CGGUGGC
..(((((.(((.(((((...((..((..(((((.(((((((((((((.((........))..)))))..)))))))).)))))..))))..))))).------.)))------))))).. ( -44.40)
>DroPse_CAF1 3188 106 + 1
GACGCUGCGCAAGGGCGAGUUCUGGACGUGCAGCCACUGCACUCUCAAGAACUCGCUGCACUAUGGUCUGUGCAGUGCCUGCAAGUCCAUUCGGCUG------CUCC------CCGUC--
((((..(.(((..(((((((((((((.((((((...)))))))))..))))))))))((...((((.((.(((((...))))))).))))...))))------).).------.))))-- ( -47.00)
>DroWil_CAF1 3846 106 + 1
GACAUUGCGAAAGGGUGAAUUCUGGACAUGCAGCCAUUGCACUCUUAAGAAUUCACUUCAUUCGGGCUUGUGCAGUGCCUGCAAAUCAAUACGAUUA------UUGC------CAGUA--
..((((.(....)))))....((((.(((((((.((((((((......((((.......))))......)))))))).)))))((((.....)))).------.)))------)))..-- ( -30.80)
>DroAna_CAF1 3805 118 + 1
GACGCUGCGCAAGGGCGAGUUCUGGACAUGCAGCCACUGCACUUUGAAGAACUCGCUCCAUUCGCCGGUGUGCAGUGCCUGCAAGUCGCACCGACAGCCCCAGCUAUCGAUGGCAUUG--
.((((((.(((((((((((((((.((..(((((...)))))..))..))))))))).)).)).)))))))).((((((((((.....))).(((.(((....))).)))..)))))))-- ( -48.70)
>DroPer_CAF1 2719 106 + 1
GACGCUGCGCAAGGGCGAGUUCUGGACGUGCAGCCACUGCACUCUCAAGAACUCGCUGCACUAUGGUCUGUGCAGUGCCUGCAAGUCCAUUCGGCUG------CUCC------CCGUC--
((((..(.(((..(((((((((((((.((((((...)))))))))..))))))))))((...((((.((.(((((...))))))).))))...))))------).).------.))))-- ( -47.00)
>consensus
GACGCUGCGCAAGGGCGAGUUCUGGACAUGCAGCCACUGCACUCUCAAGAACUCGCUGCACUCGGGCCUGUGCAGUGCCUGCAAGUCCAUCCGACUG______CUCC______CCGUG__
(((..(((....(((((((((((.((.((((((...))))).).)).)))))))(((((((........)))))))))))))).)))................................. (-29.18 = -28.60 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:01 2006