| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,164,265 – 21,164,355 |
| Length | 90 |
| Max. P | 0.610017 |
| Location | 21,164,265 – 21,164,355 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 75.83 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -15.89 |
| Energy contribution | -17.67 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21164265 90 + 22224390 CCGAGUC---------GCAGGUGGAGGAGCACUCCAUCUACGCCAAAGUGUGGAAGGGACCGCGCAAGGCGACCGAGUCGAAAAUGUAAUUGGCAGCUA---- .(((.((---------(.((((((((.....)))))))).((((...((((((......))))))..))))..))).)))....(((.....)))....---- ( -35.10) >DroEre_CAF1 1723 90 + 1 CCGAGUC---------GCAGGUGGAGGAGCACUCCAUCUACGCCAAGGUGUGGAAGGGACCGCGCAAGGCGACCGAGUCGAAAAUGUAAUUGGCAGCGA---- .....((---------((((((((((.....)))))))).((((...((((((......))))))..)))).....(((((........))))).))))---- ( -36.60) >DroWil_CAF1 2446 85 + 1 UCGAUUU---------ACAUGUGGAAGAGCAUUCCAUUUAUGCCAAGGUCUGGAAGGGACCACGCAAAACGACUGAAUCGAAAAUGUAAAAGAA--------- (((((((---------(...((((((.....))))))...(((...(((((.....)))))..))).......)))))))).............--------- ( -21.20) >DroYak_CAF1 1743 90 + 1 CCGAGUC---------GCAGGUGGAGGAGCACUCCAUCUACGCCAAGGUGUGGAAGGGACCGCGCAAGGCGACCGAGUCGAAAAUGUAAUUGGCAGCGA---- .....((---------((((((((((.....)))))))).((((...((((((......))))))..)))).....(((((........))))).))))---- ( -36.60) >DroMoj_CAF1 1987 97 + 1 CAGAUUAU------UAUCACGCAUCUGAGCAUUCGAUAUACGCCAAGGUGUGGAAGGGACCGCGCAAAACGACUGAAUCCAAAAUGUAUGCAGCAACAAUAAU ...(((((------(.((.(((((((..((...........))..))))))))).......(((((..(((..((....))...))).))).))...)))))) ( -15.50) >DroAna_CAF1 2960 95 + 1 CCGAAUCUCAGGCAUCACAGGUGGAGGAGCAUUCCAUUUAUGCCAAGGUCUGGAAGGGACCGCGCAAAGCCACCGAAUCAAAAAUGUAAUUGUCC-------- ..((.((...(((.....((((((((.....)))))))).(((...(((((.....)))))..)))..)))...)).))................-------- ( -23.40) >consensus CCGAGUC_________GCAGGUGGAGGAGCACUCCAUCUACGCCAAGGUGUGGAAGGGACCGCGCAAAGCGACCGAAUCGAAAAUGUAAUUGGCAGC_A____ .(((.((...........((((((((.....)))))))).(((....((((((......))))))...)))...)).)))....................... (-15.89 = -17.67 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:00 2006