| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,162,365 – 21,162,458 |
| Length | 93 |
| Max. P | 0.710653 |
| Location | 21,162,365 – 21,162,458 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -16.08 |
| Energy contribution | -15.86 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21162365 93 - 22224390 ------------UUCCCCACUUCCUGACCGCAAAGGUUAUCUCAAUGACUGGCCAUUUUCCUACUCUCCGCUCGUCCGCUCGACUCGGAAGUUGUUCCUACACCU ------------......(((((((((((.....))))).......(((.(((................))).)))..........))))))............. ( -15.99) >DroSim_CAF1 6247 89 - 1 ------------UUCCCCACUUCCUGACCGCAAAGGUUAUCUCAAUGACUGGCCAUUUUCCUACUCUCCGCUCGUCCGCUCGACUCGGAAGUUCUU----CAGCU ------------......(((((((((((.....))))).......(((.(((................))).)))..........))))))....----..... ( -15.99) >DroEre_CAF1 7072 101 - 1 CGACUUCUCGACUUCCUGACUUCCUGACCGCAAAGGUUAUCUCAAUGACUGGCCAUUUUCCUACUCUCCGCUCGUCCGCUCCACUCGGGAGUUCUU----CAGCU .........((.(((((((.....(((((.....))))).......(((.(((................))).)))........))))))).))..----..... ( -18.19) >consensus ____________UUCCCCACUUCCUGACCGCAAAGGUUAUCUCAAUGACUGGCCAUUUUCCUACUCUCCGCUCGUCCGCUCGACUCGGAAGUUCUU____CAGCU ..................(((((((((((.....))))).......(((.(((................))).)))..........))))))............. (-16.08 = -15.86 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:57 2006