Locus 8542

Sequence ID X_DroMel_CAF1
Location 21,160,359 – 21,160,455
Length 96
Max. P 0.971866
window14058

overview

Window 8

Location 21,160,359 – 21,160,455
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 90.46
Mean single sequence MFE -29.20
Consensus MFE -25.20
Energy contribution -25.20
Covariance contribution -0.00
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.86
SVM decision value 1.68
SVM RNA-class probability 0.971866
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21160359 96 - 22224390
UUGUAGUGUCCAAG-AAAACGCAGCAAAGAUGGUUAGCUCGGAGCCGAAAGGACCUGCUAACGUGGCCAACACGGCCUCGCCCCUCAAGGCCCAUGA
((((.((((.....-...)))).))))..(((((((((..((..((....)).)).))))))(.((((.....)))).)(((......))).))).. ( -31.90)
>DroSec_CAF1 4298 96 - 1
UUUAAGUGUCGAAG-AAAACGAAGCAAAGAUGGUUAGCUUGGAGCCGAAAGGACCUGCUAACGUGGCCAACACGGCCUCGCCCCUCAAGGCCAAUAA
.....((.(((...-....))).)).......((((((..((..((....)).)).))))))(.((((.....)))).)(((......)))...... ( -29.30)
>DroSim_CAF1 4243 96 - 1
UUUAAGUGUCGAAG-AAAACGCAGCAAAUAUGGUUAGCUUGGAGCCGAAAGGACCUGCUAACGUGGCCAACACGGCCUCGCCCCUCAAGGCCAAUAA
.....((((.....-...))))..........((((((..((..((....)).)).))))))(.((((.....)))).)(((......)))...... ( -29.20)
>DroEre_CAF1 4978 97 - 1
UUUAAGUGUCGGAAAAACACGCAGAAAAGAUGGUUAGUUCGGAGCCGAAAGGACCUGCGAACGUGGCCAAAACGGCCUCGCCCUUCAAGGCCAACAA
.....((((.(......)))))........(((((((((((.((((....))..)).))))).))))))....(((((.........)))))..... ( -30.60)
>DroYak_CAF1 4375 96 - 1
UUUAAGUGUCGAAA-AAAACGCAAAAAAGAUGGUUAGUUCGGAGCCGAAAGGACCUGCUAACGUGGUCAAAACGGCCUCGCCCCUCAAGGCCAACAA
.....((((.....-...))))......(.(((((((..((..((((....((((.((....))))))....))))..))...))...))))).).. ( -25.00)
>consensus
UUUAAGUGUCGAAG_AAAACGCAGCAAAGAUGGUUAGCUCGGAGCCGAAAGGACCUGCUAACGUGGCCAACACGGCCUCGCCCCUCAAGGCCAAUAA
.....((((.........))))..........((((((..((..((....)).)).))))))(.((((.....)))).)(((......)))...... (-25.20 = -25.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:54 2006