Locus 8541

Sequence ID X_DroMel_CAF1
Location 21,159,013 – 21,159,133
Length 120
Max. P 0.760424
window14057

overview

Window 7

Location 21,159,013 – 21,159,133
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -46.95
Consensus MFE -25.85
Energy contribution -25.88
Covariance contribution 0.03
Combinations/Pair 1.32
Mean z-score -1.91
Structure conservation index 0.55
SVM decision value 0.50
SVM RNA-class probability 0.760424
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21159013 120 - 22224390
ACCAAAGCCAAGCUGGUGGACAGCCUGUACGGACAUAUAGUGCGUUUGGCCGGACACAGCAUCGGCAGUGGGCUGCUGGAUUCGAUGUAUCAGAGCGCCACACCCAAUCAGCGCAUCUAU
......(((..((((.((..(.(((...(((.((.....)).)))..))).)..))))))...))).(((((((.((((((.....)).))))))).))))................... ( -38.30)
>DroPse_CAF1 2838 120 - 1
ACCAAAAGCAAGCUGGUGGACAGCCUGUUCGGUCACAUUGUCCGCCUGGCGGGGCACAGUAUUGCCAGCGGUCUGCUGGACGUUAUGUACCAGGGUGGUACUCGUCAGCAGCGUACCCAU
.......((..((((((((((((..((......))..))))))))).)))..((((......)))).))(((.(((((((((....(((((.....))))).))))..))))).)))... ( -48.10)
>DroEre_CAF1 3677 120 - 1
ACCAAAUCAAAGCUGGUGGACAGCCUGUACGGACAUAUAGUGCGUUUGGCUGGACACAACAUCGGCAGUGGGCUGCUGGACACGAUGUACCAGAGCGCCACACCGAAGCAGCGCACCUUC
...........(((((((..(((((...(((.((.....)).)))..)))))..)))....((((..(((((((.((((((.....)).))))))).)))).))))..))))........ ( -50.30)
>DroYak_CAF1 3008 120 - 1
ACCAAGGCAAAGUUGGUGGACAGCCUGUACGGACAUAUAGUGCGUUUGGCUGGACACAGCAUCGGCAGUGGGCUACUGGACACGAUGUACCAGAGUGCCACACCCAAGCAGCGCAUCUUC
...((((....(((((((..(((((...(((.((.....)).)))..)))))..)))......((..(((((((.((((((.....)).))))))).))))..))...))))...)))). ( -42.40)
>DroAna_CAF1 2364 120 - 1
ACCAAGACGAAGCUGAUCGACAGCCUGAUGGGCAAUGUGGUCCGAUUGGCGGGCCACAACAUCGCCAGCGGGCUGUUGGACACCAUGUACCAGGGCGCCACGCCGCAGCAGCGUAUUAAC
......(((..((((.(((((((((((...(((..(((((((((.....))))))))).....)))..)))))))))))..............((((...)))).))))..)))...... ( -52.90)
>DroPer_CAF1 8783 120 - 1
ACCAAAAGCAAGCUGGUGGACAGCCUCUUCGGGCACAUUGUCCGCCUGGCGGGGCACAGUAUUGCCAGUGGUCUGCUGGACGUUAUGUACCAGGGUGGUACUCGUCAGCAGCGUACCCAU
...........(((((((((((((((....))))....)))))))).)))((((((......)))).(((..((((((.(((....(((((.....))))).)))))))))..))))).. ( -49.70)
>consensus
ACCAAAACCAAGCUGGUGGACAGCCUGUACGGACAUAUAGUCCGUUUGGCGGGACACAGCAUCGCCAGUGGGCUGCUGGACACGAUGUACCAGAGCGCCACACCCAAGCAGCGCACCUAC
...........(((((((..(.(((...(((.((.....)).)))..))).)..)))..........((((((..((((((.....)).))))...))).))).....))))........ (-25.85 = -25.88 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:53 2006