| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,156,103 – 21,156,211 |
| Length | 108 |
| Max. P | 0.942242 |
| Location | 21,156,103 – 21,156,211 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.07 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -20.19 |
| Energy contribution | -21.25 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.942242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21156103 108 + 22224390 -------AACUCA---AAUUAAGUGAAAACAGCAUGCCAGAUGCCGAGCAACUACCGGACGGCUGGGAGAAGCGCACUAGCCGCUCCACAGGUAAGCAUCGUGUGCAGUCCCGCUCGU -------......---......((....)).((((.....))))(((((...((((((((((((((..........))))))).)))...)))).((((...))))......))))). ( -33.60) >DroSec_CAF1 1 85 + 1 ---------------------------------AUGCCUGAUGCCGAGCAACUACCGGAGGGCUGGGAGAAGCGCACUAGCCGCUCCACAGGUAAGCAUUGAGUGCAGAACCGCUCGU ---------------------------------.((((((.(((...)))......((((((((((..........)))))).)))).))))))......(((((......))))).. ( -31.50) >DroSim_CAF1 1 107 + 1 --------AUUCA---AAUUGAGUGAAAACAGCAUGCCUGAUGCCGAGCAACUACCGGAGGGCUGGGAGAAGCGCACUAGCCGCUCCACAGGUAAGCAUUGAGUGCAGAACCGCUCGU --------.....---......((....)).((.((((((.(((...)))......((((((((((..........)))))).)))).)))))).))...(((((......))))).. ( -36.50) >DroEre_CAF1 658 115 + 1 GUAAUUUAGUUAU---AAUAAAACGAAAACAGCAUGCCUGACUCCGAGCAACUACCGGAGGGCUGGGAGAAGCGCACCAGCCGCUCCACAGGUAAGCAUCAAAAGCACUACCGCUCAU .............---...............((.((((((.(((((.(......))))))((((((..........))))))......)))))).))......(((......)))... ( -32.70) >DroYak_CAF1 1 106 + 1 --------GUUUA---AAUCAAGCGAAAACAGAAUGCCUGACUCGGAGCAACUACCGGAGGGCUGGGAAAAGCGCACCAGCCGCUCCACAGGUAAGC-UUAAAUGCACUACCGCUCAU --------.....---.......(((...(((.....)))..)))((((.......((((((((((..........)))))).))))...((((.((-......))..)))))))).. ( -35.50) >DroPer_CAF1 5913 99 + 1 GAAA----GUUUAACAAGCCAAACAAAAUAACAAUGCCUGAUGCUGAACAAUUGCCCGAUGGCUGGGAGAAGCGCACAAGUCGCUCCACAGGUACGCAAACA---C------------ ....----((((........))))..........((((((.............(((....)))..((((..((......))..)))).))))))........---.------------ ( -20.50) >consensus ________GUUCA___AAUCAAGCGAAAACAGCAUGCCUGAUGCCGAGCAACUACCGGAGGGCUGGGAGAAGCGCACUAGCCGCUCCACAGGUAAGCAUUGAGUGCAGUACCGCUCGU .............................................((((...((((((((((((((..........)))))).))))...)))).((.......))......)))).. (-20.19 = -21.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:52 2006