Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,150,790 – 21,150,910 |
Length | 120 |
Max. P | 0.697317 |
Location | 21,150,790 – 21,150,910 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -26.55 |
Energy contribution | -28.08 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.62 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21150790 120 + 22224390 CAUUCCCCAGCUCCAUGCGGCAGAUGUCGCGGGUGCAGUGGCUCACACUGGAUCGCACGCAGCUGGCGGAGAUUCCCGAGGAGCUAGGCCACCUACAGAAGCUGGAGCACCUGUCGCUGA ......((((((.(..(((((....)))))((((((..((((((.....(((((...(((.....)))..))))).....)))))).).)))))...).))))))(((.......))).. ( -45.60) >DroVir_CAF1 91343 120 + 1 CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGCGUCCAGUGGCUAACACUAGACCACACACAGCUGCAGCAAAUACCCGAGGAGCUGGGCCAUCUUCAGAAGCUGGAGCACCUCUCCCUAA .....(((((((((..(((((....)))))(.(((.((((.....)))).)))).......((....))..........)))))))))....((((((...))))))............. ( -40.80) >DroGri_CAF1 98229 120 + 1 CAUUCCCUAGUUCGAUGCGGCAAAUGUCUCGGGUCCAGUGGCUAACACUGGACCACACACAGCUCCAUCAAAUACCCGAGGAGCUGGGCCACCUGCAGAAAUUGGAGCACCUAUCCUUGA ......((((((...(((((.....(((...(((((((((.....))))))))).....(((((((.((........))))))))))))...)))))..))))))............... ( -43.10) >DroWil_CAF1 16001 120 + 1 CAUUCCCUAGCUCCAUGCGCCAAAUGCUACGGGUGCAAUGGCUCAAUUUGGAUCGCACCCAAUUGCAAGAAGUGCCCGAGGAGCUGGGCCAAUUGCAGAAACUGGAGCAUUUGUCCCUCA .....(((((((((..((((....(((...((((((...((..(.....)..))))))))....)))....))))....))))))))).(((.(((..........))).)))....... ( -38.10) >DroMoj_CAF1 42329 120 + 1 CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGCGUCCAGUGGCUGACACUGGACCACACACACCUACAGCAAGUACCCGAGGAGCUGGGCCACUUACAGAAACUCGAGCACCUCUCACUCA .....(((((((((..(((((....)))))(.((((((((.....))))))))).........................)))))))))................(((.....)))..... ( -43.80) >DroAna_CAF1 16520 120 + 1 CAUUCCCCAGCAGCAUGCGGCAAAUGUCGCGGGUGCAGUGGCUCAAUCUGGAUCGCACCCAGCUGGCGGAGAUACCCGAAGAGCUGGGCCACCUGCAGAAGCUGGAGCAUCUCUCCCUAA ......(((((.......(((....)))(((((((..((((..(.....)..)))).(((((((..(((......)))...))))))).)))))))....)))))............... ( -45.90) >consensus CAUUCCCCAGCUCCAUGCGGCAAAUGUCGCGGGUCCAGUGGCUCACACUGGACCACACACAGCUGCAGCAAAUACCCGAGGAGCUGGGCCACCUGCAGAAACUGGAGCACCUCUCCCUAA .....(((((((((.((((((....))))))(((.(((((.....))))).))).........................)))))))))(((.((.....)).)))............... (-26.55 = -28.08 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:48 2006