Locus 8537

Sequence ID X_DroMel_CAF1
Location 21,149,650 – 21,149,765
Length 115
Max. P 0.879630
window14050

overview

Window 0

Location 21,149,650 – 21,149,765
Length 115
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 96.91
Mean single sequence MFE -36.86
Consensus MFE -33.16
Energy contribution -32.88
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.90
SVM decision value 0.91
SVM RNA-class probability 0.879630
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21149650 115 - 22224390
UCAAAACGGUCACAUUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGCGAAA--AAACAGUAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
((((...(((((((((((((...(((((.(.....(((.(.((..((((((.....)))))--).)).....).)))...).)))))...)))))....))))))))...))))... ( -33.50)
>DroSec_CAF1 13806 116 - 1
UCAAGGCGGUCACACUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGCGAAA-AAAACAGCAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
((((...(((((((((.((((..(((.(..(((((((.((((.(......))))).)))))-))..))))..)))).((((....).)))........)))))))))...))))... ( -39.60)
>DroSim_CAF1 25164 116 - 1
UCAAGGCGGUCACACUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGCGAAA-AAAACAGCAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
((((...(((((((((.((((..(((.(..(((((((.((((.(......))))).)))))-))..))))..)))).((((....).)))........)))))))))...))))... ( -39.60)
>DroEre_CAF1 14358 117 - 1
UCAAGGCGGUCACACUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGCGAAAAAAAACAGCAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
((((...(((((((((.((((..(((.(..(((((((.((((.(......))))).)))))))...))))..)))).((((....).)))........)))))))))...))))... ( -37.70)
>DroYak_CAF1 14371 116 - 1
UUAAGGCGGUCACACUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGGGAAA-AAAGCAGCAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
.......(((((((((.((((..(((.(..((((((..((((.(......)))))..))))-))..))))..)))).((((....).)))........))))))))).......... ( -33.90)
>consensus
UCAAGGCGGUCACACUGGAUGGGGUUCGGGUUUUUCGAAGGGUCCUUUUCGUCCUGCGAAA_AAAACAGCAACAUCGUAUCGUGAGCAUAAUCCAGAGGGUGUGACCAAAUUGAACG
((((...(((((((((((((...(((((.(.....(((.(.((...(((((.....)))))....)).....).)))...).)))))...)))))....))))))))...))))... (-33.16 = -32.88 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:47 2006