Locus 8536

Sequence ID X_DroMel_CAF1
Location 21,148,114 – 21,148,230
Length 116
Max. P 0.977040
window14049

overview

Window 9

Location 21,148,114 – 21,148,230
Length 116
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 88.74
Mean single sequence MFE -32.44
Consensus MFE -26.32
Energy contribution -25.80
Covariance contribution -0.52
Combinations/Pair 1.15
Mean z-score -2.26
Structure conservation index 0.81
SVM decision value 1.78
SVM RNA-class probability 0.977040
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21148114 116 + 22224390
-AGAGCGUUGGUUAACAAAAACGUUGCAUACAAAGAGGCGUAACAGCUCUACACGCACA--GUAUUUGAAAUGUGCACACCGCAAAAUCACGCGAUUUGUGGGCGUGGCAAUGUUUGCA
-...((.(((.....)))(((((((((......((((.(......))))).(((((...--((((.......))))...(((((((.((....))))))))))))))))))))))))). ( -36.20)
>DroSec_CAF1 12155 116 + 1
-AGAGCGUUUGUUAACAAAAACGUUGCAUACAAAGCGGCAUAACAACUCUACACGCACA--AAAUUUGAAAUGUGCACACCGCAAAAUCACGCGAUUUGUGGGCGUGGCAAUGUUUGCA
-..(((((((........)))))))(((.(((..((.((...............(((((--..........)))))...(((((((.((....)))))))))..)).))..))).))). ( -32.30)
>DroSim_CAF1 23515 116 + 1
-AGAGCGUUUGUUAACAAAAACGUUGCAUACAAAGCGGCAUAACAACUCUACACGCACA--GAAUUUGAAAUGUGCACACCGCAAAAUCACGCGAUUUGUGGGCGUGGCAAUGUUUGCA
-..(((((((........)))))))(((.(((..((.((...............(((((--..........)))))...(((((((.((....)))))))))..)).))..))).))). ( -33.10)
>DroEre_CAF1 12669 117 + 1
GCAUUCCAAUCUUAACAAAAACAUUGCAUACAAAACGGCGUAACAACUUUACACGCGCA--AUAUUUGAAAUGUGCACACCGUAGAAUCACGCGAUUUGAGGGCGUGGCAAUGUUUGCA
..................(((((((((.......((((.((((.....))))..(((((--..........)))))...)))).....(((((.........))))))))))))))... ( -28.80)
>DroYak_CAF1 12730 118 + 1
-AAUACGCUUCUUAGCAAAAACGUUGCAUACAAAACGGCGUAACCACUUUACACGCACAAAAUAUUCGAAAUGUGCACACCGCAGAAUCACGCGAUUUGUGGGCGUGGCAAUGUUUGCA
-.....(((....)))..(((((((((.........((.....))......((((((((............)))))...(((((((.((....)))))))))..))))))))))))... ( -31.80)
>consensus
_AGAGCGUUUGUUAACAAAAACGUUGCAUACAAAGCGGCGUAACAACUCUACACGCACA__AUAUUUGAAAUGUGCACACCGCAAAAUCACGCGAUUUGUGGGCGUGGCAAUGUUUGCA
..................(((((((((.........(......).......((((((((............)))))...(((((((.((....)))))))))..))))))))))))... (-26.32 = -25.80 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:46 2006