Locus 8534

Sequence ID	X_DroMel_CAF1
Location	21,139,578 – 21,139,670
Length	92
Max. P	0.903030

overview

Window 7

Location	21,139,578 – 21,139,670
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	89.72
Mean single sequence MFE	-17.69
Consensus MFE	-13.92
Energy contribution	-13.60
Covariance contribution	-0.32
Combinations/Pair	1.11
Mean z-score	-1.97
Structure conservation index	0.79
SVM decision value	1.03
SVM RNA-class probability	0.903030
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21139578 92 - 22224390
AAAUCGAAGCGCUUAGUGGCAUAUUAAUAAACGAUUAAAACCAA-AAUGAACCACGCAGGCGAUUCUAACGAAUCGUACGAACAGUUUGAAAA
...((.((((((((.((((..((((...................-))))..))))..))))(((((....))))).........))))))... ( -17.91)
>DroSec_CAF1 3703 92 - 1
AAAUCGAAGCGCUUAGUGGCAUAUUUAUAAACGAGUAAAACCAA-AAUGAACCACACAGGCGAUUCUAACGAAUCGUGCGAACAGUUUGAAAA
...(((((.(((...((((..(((((.................)-))))..))))....(((((((....)))))))))).....)))))... ( -20.43)
>DroSim_CAF1 4185 92 - 1
AAAUCGAAGCGCUUAGUGGCAUAUUUAUAAACGAGUAAAACCAA-AAUGAACCACACAGGCGAUUCUAGCGAAUCGUGCGAACAGUUUGAAAA
...(((((.(((...((((..(((((.................)-))))..))))....(((((((....)))))))))).....)))))... ( -18.43)
>DroEre_CAF1 4317 93 - 1
AAAUCGAAGCGCUUAGUGGCAUAUUAAUAAACGAAUAAAACCAAAAAUGAACCACAAAGGUGAUUCUAACGAAUCGUAAGAACAGUUUAAAAA
..........(((....))).......(((((..................(((.....)))(((((....))))).........))))).... ( -14.10)
>DroYak_CAF1 4048 85 - 1
AAAUCGAAGCGCUUAGUGGCAUAAUAAUAAACGAGUA--------AAUGUACCACAAAGGCGAUUCUAGCGAAUCGCAAGAACAGUUUAAAAA
......((((.(((.((((.(((..............--------..))).)))).)))(((((((....))))))).......))))..... ( -17.59)
>consensus
AAAUCGAAGCGCUUAGUGGCAUAUUAAUAAACGAGUAAAACCAA_AAUGAACCACACAGGCGAUUCUAACGAAUCGUACGAACAGUUUGAAAA
......((((.....(((((((........................)))..))))....(((((((....))))))).......))))..... (-13.92 = -13.60 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:43 2006