Locus 8532

Sequence ID X_DroMel_CAF1
Location 21,134,588 – 21,134,688
Length 100
Max. P 0.652904
window14042

overview

Window 2

Location 21,134,588 – 21,134,688
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.40
Mean single sequence MFE -20.29
Consensus MFE -19.33
Energy contribution -19.49
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.14
Structure conservation index 0.95
SVM decision value 0.25
SVM RNA-class probability 0.652904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21134588 100 - 22224390
GAUGCUGCGAAAGUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))......((((((((((((......((((........................))))......)).)))))))))) ( -20.06)
>DroSec_CAF1 2213 100 - 1
GAUGCUGCGAAACUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUAAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))......((((((((((((......((((........................))))......)).)))))))))) ( -20.06)
>DroSim_CAF1 2172 100 - 1
GAUGCUGCGAAACUGCGAUAGUAUCGAAUAAACAUGAGAGUGUGCAUAAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))......((((....))))((((((((((((.................................)))))))))))) ( -22.41)
>DroEre_CAF1 2561 100 - 1
GAUGCUGCGAAUGCGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGAGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))......((((((((((((..((((((......))))))...)).....((.....))........)))))))))) ( -19.10)
>DroYak_CAF1 2375 100 - 1
GAUGCUGCGAAAGUGCGAUAGUAUCGAGUAAACAUGAGUUUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))...(((((....))))).((((((((((((.................................)))))))))))) ( -19.81)
>consensus
GAUGCUGCGAAAGUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU
(((((((((......)).)))))))......((((....))))((((((((((((.................................)))))))))))) (-19.33 = -19.49 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:39 2006