| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,127,170 – 21,127,284 |
| Length | 114 |
| Max. P | 0.887733 |
| Location | 21,127,170 – 21,127,284 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -33.97 |
| Consensus MFE | -22.98 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21127170 114 + 22224390 AUCAAAAAAUCUUUAAAUUU--GAGAAAGCAAUCCUAAUUAGCAC----GUCUUUUGCAGUUCGGAUGCUGCGGGAGGAGCUGCAGCUGCUCCAGGAACAGGGUAGCUAUGUGGGCGAGG .((......((((.......--)))).......((((....((((----..((((((((((......))))))))))..).)))((((((((........))))))))...)))).)).. ( -33.50) >DroPse_CAF1 163 111 + 1 ---AAAGAG-----AAAAUGAAGAGAA-ACAAUGAAACGAAACACAAAUUCCUUUUGCAGUUCGCAUGCUGCGGGAGGAACUGCAGCUGCUGCAGGAGCAGGGCAGCUAUGUGGGCGAGG ---......-----.............-.........((...((((..(((((((((((((......)))))))))))))((((..(((((.....))))).))))...))))..))... ( -37.00) >DroSec_CAF1 245 114 + 1 AUCAAAGAAUCUUUAAAUUU--GAGAAACCAAUCCUAAUUAUCAC----GUCUUUCACAGUUCGGAUGCUGCGGGAGGAGCUGCAGCUGCUCCAGGAACAGGGUAGCUAUGUGGGCGAGG .(((((...........)))--)).........(((.....((((----((((..(.((((......)))).)..)).((((((..(((.((...)).))).))))))))))))...))) ( -28.40) >DroSim_CAF1 245 114 + 1 AUCAAAGAAUCUUUAAAUUU--GAGAAACCAAUCCUAAUUAUCAC----GUCUUUUACAGUUCGGAUGCUGCGGGAGGAGCUGCAGCUGCUCCAGGAGCAGGGUAGCUAUGUGGGCGAGG .(((((...........)))--)).........(((.....((((----((((((..((((......))))..)))).((((((..((((((...)))))).))))))))))))...))) ( -33.80) >DroEre_CAF1 531 104 + 1 CUU----------UACAUUU--AAGAAACCAAUCCUAAUAAGCAC----GUCUUUUGCAGUUCGCAUGCUCCGGGAGGAGCUGCAGCUGCUCCAGGAACAGGGUAGCUAUGUGGGCGAGG ...----------.......--...........(((.....(((.----......))).(((((((((((((....)))))...((((((((........)))))))))))))))).))) ( -33.60) >DroYak_CAF1 240 90 + 1 GCC----------CACAAUU--ACUACAU---UAC---------------UAUUUUGCAGUUCGCAUGCUGCGGGAGGAGCUGCAGCUGCUCCAGGAACAGGGUAGCUAUGUGGGCGAGG (((----------((((...--.((((..---..(---------------(.(((((((((......))))).((((.(((....))).)))).)))).)).))))...))))))).... ( -37.50) >consensus AUCAAAGAA____UAAAUUU__GAGAAACCAAUCCUAAUUAGCAC____GUCUUUUGCAGUUCGCAUGCUGCGGGAGGAGCUGCAGCUGCUCCAGGAACAGGGUAGCUAUGUGGGCGAGG ..................................................(((((((((((......)))))))))))..(..(((((((((........)))))))..))..)...... (-22.98 = -23.40 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:38 2006