Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,425,861 – 2,425,978 |
Length | 117 |
Max. P | 0.650923 |
Location | 2,425,861 – 2,425,978 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.42 |
Mean single sequence MFE | -22.83 |
Consensus MFE | -20.43 |
Energy contribution | -19.77 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.08 |
Mean z-score | -1.46 |
Structure conservation index | 0.89 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2425861 117 + 22224390 UUUAUUCGAAACUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACACACACGCAACGCACUGUACUUGCUAUGGCAACUCUAUGGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU ................((((......(((((((...)))))))................((((((....(((((((.....)))))))....(......)))))))..))))..... ( -22.90) >DroSim_CAF1 35589 106 + 1 ----------AAUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACUCUCCCGAAACGCACUGUACUUGCUAUGGCAACUCUG-GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU ----------................(((((((...)))))))..........((....((((((..((((....))))....(-((..........))))))))).....)).... ( -23.50) >DroEre_CAF1 71732 112 + 1 GUUAC----AAUUAAAACUUAAUUAAGUCUAAUUUAAUUAGGCUUACACUCCUGAAACGCACUGUACUUGCUAUGGCAACUCUG-GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU .....----.......((((...((((((((((...)))))))))).............((((((..((((....))))....(-((..........)))))))))..))))..... ( -22.10) >consensus _UUA_____AAAUAAAACUUAAUUAAGCCCAAUUUAAUUGGGCCUACACUCCCGAAACGCACUGUACUUGCUAUGGCAACUCUG_GGCUAAAGAAACCCCGCAGUGAAAAGUCUUUU ................((((......(((((((...)))))))................((((((..((((....)))).(((........)))......))))))..))))..... (-20.43 = -19.77 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:19 2006