| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,112,341 – 21,112,440 |
| Length | 99 |
| Max. P | 0.538025 |
| Location | 21,112,341 – 21,112,440 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.35 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -14.79 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21112341 99 - 22224390 U-GAUUCCAUUUUAAUUUUAGUUCCAGUUGGUAGCAGCCAGCUGCCAAUGAAUCUGAUUGUAACAGAUUAAUUGUUUCUAGCCGAGUUAUACA----UAUGUAU------- (-(((((.................((((((((....)))))))).((((.((((((.......)))))).)))).........))))))(((.----...))).------- ( -21.30) >DroSec_CAF1 5491 95 - 1 U-GAUUCCAUUUUAAUUUUAGCUCCAGUUGGUAGCAGCCAGCUGCCAAUGAAUCUGAUUGUUUUGAAUUAAUUGUUUCUAGCCGAGUUAUACA----UAU----------- .-................((((((..(((((((((.....)))))))))(((...(((((........)))))..))).....))))))....----...----------- ( -20.10) >DroEre_CAF1 6259 111 - 1 UAGAUUCCAUUUUAAUUUUAGUUCCAGUUGGUAGCUGGCAGCUGCCAAUAAAUCUGAUUUUAACAGAGUCAUUGUUACUAACCGAGUUAUACAUGCAUACAUAUGUAUGUA ..(((((....((((..((((.....(((((((((.....)))))))))....))))..))))..)))))...................(((((((((....))))))))) ( -29.90) >DroYak_CAF1 6792 107 - 1 UAGAAUCCAUUUUAAUUUUAGUUCCAGUUGGUAGCUGCCAGCUGCCAAUGAAUCCGAUUGUAACAGAGUAAUUGUUUCUAACCGAGUUAUACA----UAUGUAUGUACAUA (((((...............((((..(((((((((.....))))))))))))).((((((........)))))).))))).....(((((((.----...))))).))... ( -21.60) >consensus U_GAUUCCAUUUUAAUUUUAGUUCCAGUUGGUAGCAGCCAGCUGCCAAUGAAUCUGAUUGUAACAGAGUAAUUGUUUCUAACCGAGUUAUACA____UAUGUAU_______ ..(((((..........((((.....(((((((((.....)))))))))....))))....(((((.....))))).......)))))....................... (-14.79 = -15.22 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:35 2006