| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,095,286 – 21,095,397 |
| Length | 111 |
| Max. P | 0.943645 |
| Location | 21,095,286 – 21,095,397 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 97.02 |
| Mean single sequence MFE | -15.90 |
| Consensus MFE | -15.99 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.47 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21095286 111 + 22224390 AUCUUGCGCCUCCCCCGCAUUCGGCAGGACU-UUAUAACUAUUUUUUCUCAUUUUCAUUUUUCUUUUGGAAGCACUCUGGUGUCAUUUUAAUGCCCACUCCCUGGCCUUUCU ....((((.......))))...((((((...-....................(((((.........)))))((((....)))).................))).)))..... ( -15.60) >DroSec_CAF1 25963 112 + 1 CUCUUGCGCCUCCCCCGCAUUCGGCAGGACUUUUAUAACUAUUUUUUCUCAUUUUCAUUUUUCCUUUGAAAGCACUCUGGUGUCAUUUUAAUGCCCACUCCCUCGCCUUUCU ....((((.......))))...((((((........................(((((.........)))))((((....)))).................))).)))..... ( -16.10) >DroSim_CAF1 38931 112 + 1 CUCUUGCGCCUCCCCCGCAUUCGGCAGGACUUUUAUAACUAUUUUUUCUCAUUUUCAUUUUUCCUUUGGAAGCACUCUGGUGUCAUUUUAAUGCCCACUCCCUCGCCUUUCU ....((((.......))))...((((((................................((((...))))((((....)))).................))).)))..... ( -16.00) >consensus CUCUUGCGCCUCCCCCGCAUUCGGCAGGACUUUUAUAACUAUUUUUUCUCAUUUUCAUUUUUCCUUUGGAAGCACUCUGGUGUCAUUUUAAUGCCCACUCCCUCGCCUUUCU ....((((.......))))...((((((........................(((((.........)))))((((....)))).................))).)))..... (-15.99 = -15.77 + -0.22)
| Location | 21,095,286 – 21,095,397 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 97.02 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -23.35 |
| Energy contribution | -23.13 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21095286 111 - 22224390 AGAAAGGCCAGGGAGUGGGCAUUAAAAUGACACCAGAGUGCUUCCAAAAGAAAAAUGAAAAUGAGAAAAAAUAGUUAUAA-AGUCCUGCCGAAUGCGGGGGAGGCGCAAGAU ......(((........))).................((((((((.........((((..((........))..))))..-...(((((.....)))))))))))))..... ( -25.00) >DroSec_CAF1 25963 112 - 1 AGAAAGGCGAGGGAGUGGGCAUUAAAAUGACACCAGAGUGCUUUCAAAGGAAAAAUGAAAAUGAGAAAAAAUAGUUAUAAAAGUCCUGCCGAAUGCGGGGGAGGCGCAAGAG ...............(((.(((....)))...)))..((((((((..((((...((((..((........))..)))).....)))).(((....))).))))))))..... ( -21.50) >DroSim_CAF1 38931 112 - 1 AGAAAGGCGAGGGAGUGGGCAUUAAAAUGACACCAGAGUGCUUCCAAAGGAAAAAUGAAAAUGAGAAAAAAUAGUUAUAAAAGUCCUGCCGAAUGCGGGGGAGGCGCAAGAG ...............(((.(((....)))...)))..((((((((..((((...((((..((........))..)))).....)))).(((....))).))))))))..... ( -24.40) >consensus AGAAAGGCGAGGGAGUGGGCAUUAAAAUGACACCAGAGUGCUUCCAAAGGAAAAAUGAAAAUGAGAAAAAAUAGUUAUAAAAGUCCUGCCGAAUGCGGGGGAGGCGCAAGAG ...............(((.(((....)))...)))..((((((((.........((((..((........))..))))......(((((.....)))))))))))))..... (-23.35 = -23.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:34 2006