Locus 8526

Sequence ID X_DroMel_CAF1
Location 21,093,649 – 21,093,754
Length 105
Max. P 0.514509
window14033

overview

Window 3

Location 21,093,649 – 21,093,754
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 98.10
Mean single sequence MFE -35.60
Consensus MFE -34.54
Energy contribution -34.43
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.43
Structure conservation index 0.97
SVM decision value -0.04
SVM RNA-class probability 0.514509
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21093649 105 + 22224390
AAAUGCUCCUCGGACAAUGGCUGAAAUUGUUCGCAUAUUCAUGACCGAAUUACCCACAUUCGGCUGGCGAGUGAGCGAGAGGAGAGACCCUCCAGUGUGAGCGAG
...(((((((((((((((.......)))))))((.(((((.(..((((((.......))))))..)..))))).))))).((((.....)))).....))))).. ( -33.90)
>DroSec_CAF1 24291 105 + 1
AAAUGCUCCUCGGACAAUGGCUGAAAUUGUUCGCAUAUUCAUGACCGAAUUACCCACAUUCGGCUGGCGUGUGAGCGAGAGGAGAGACCCUCCAGUGCGAGCGAG
.....(((((((.((...........((((((((((..(((.(.((((((.......)))))))))).))))))))))..((((.....)))).)).)))).))) ( -35.50)
>DroSim_CAF1 37251 105 + 1
AAAUGCUCCUCGGACAAUGGCUGAAAUUGUUCGCAUAUUCAUGACCGAAUUACCCACAUUCGGCUGGCGUGCGAGCGAGAGGAGAGACCCUCCAGUGCGAGCGAG
.....(((((((.((...........((((((((((..(((.(.((((((.......)))))))))).))))))))))..((((.....)))).)).)))).))) ( -37.40)
>consensus
AAAUGCUCCUCGGACAAUGGCUGAAAUUGUUCGCAUAUUCAUGACCGAAUUACCCACAUUCGGCUGGCGUGUGAGCGAGAGGAGAGACCCUCCAGUGCGAGCGAG
.....(((((((.((...........((((((((((..(((.(.((((((.......)))))))))).))))))))))..((((.....)))).)).)))).))) (-34.54 = -34.43 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:31 2006