| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,092,708 – 21,092,824 |
| Length | 116 |
| Max. P | 0.844549 |
| Location | 21,092,708 – 21,092,824 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.36 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21092708 116 + 22224390 CUCAUGAUGUCUCUCACUCCCACCCUUGAUCACUCUGCUGACGGUAUCUUUUUUAUACCCUAUAUGAGGGAUUCAUAAAUAUGGUUUCCCUUAUUUUUUCAGAAGCUUUUAACU----UU ..................................((.((((.(((((.......)))))....((((((((.((((....))))..))))))))....)))).)).........----.. ( -18.00) >DroSec_CAF1 22893 114 + 1 CUCAUGAUGUCUCCCACUC----CCUUGCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUAAUAAAUAUGGUUUCUCUUAUUUU--CUUAAUCUUUUUACUUUAUUU .(((((((...((((((..----....(((.....)))....((((((.....))))))......))))))...))...))))).............--..................... ( -19.50) >DroSim_CAF1 36268 116 + 1 CUCAUGAUGUCUCCCACUC----CCUUGCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUCAUAAAUAUGGUUUCUCUUAUUUUUCCAUAAUCUUUUUACUUUAUUU ......(((..((((((..----....(((.....)))....((((((.....))))))......))))))..)))...(((((..............)))))................. ( -25.04) >consensus CUCAUGAUGUCUCCCACUC____CCUUGCACUCUCUGCUGACGGUAUCUUUUUGAUACCCUAUAUGUGGGAUUCAUAAAUAUGGUUUCUCUUAUUUUU_CAUAAUCUUUUUACUUUAUUU .((((((((..((((((................((....)).((((((.....))))))......))))))..)))...))))).................................... (-14.45 = -15.23 + 0.78)
| Location | 21,092,708 – 21,092,824 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.36 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -14.97 |
| Energy contribution | -16.97 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21092708 116 - 22224390 AA----AGUUAAAAGCUUCUGAAAAAAUAAGGGAAACCAUAUUUAUGAAUCCCUCAUAUAGGGUAUAAAAAAGAUACCGUCAGCAGAGUGAUCAAGGGUGGGAGUGAGAGACAUCAUGAG ..----.(((....((((((....(((((.((....)).)))))......((((.......(((((.......))))).......((....)).)))).))))))....)))........ ( -25.10) >DroSec_CAF1 22893 114 - 1 AAAUAAAGUAAAAAGAUUAAG--AAAAUAAGAGAAACCAUAUUUAUUAAUCCCACAUAUAGGGUAUCAAAAAGAUACCGUCAGCAGAGAGUGCAAGG----GAGUGGGAGACAUCAUGAG ..............(((....--.(((((.(......).))))).....((((((......((((((.....))))))....(((.....)))....----..))))))...)))..... ( -21.50) >DroSim_CAF1 36268 116 - 1 AAAUAAAGUAAAAAGAUUAUGGAAAAAUAAGAGAAACCAUAUUUAUGAAUCCCACAUAUAGGGUAUCAAAAAGAUACCGUCAGCAGAGAGUGCAAGG----GAGUGGGAGACAUCAUGAG .................(((((..............))))).((((((.((((((......((((((.....))))))....(((.....)))....----..))))))....)))))). ( -27.64) >consensus AAAUAAAGUAAAAAGAUUAUG_AAAAAUAAGAGAAACCAUAUUUAUGAAUCCCACAUAUAGGGUAUCAAAAAGAUACCGUCAGCAGAGAGUGCAAGG____GAGUGGGAGACAUCAUGAG ..........................................((((((.((((((......((((((.....))))))....(((.....)))..........))))))....)))))). (-14.97 = -16.97 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:30 2006