Locus 8524

Sequence ID X_DroMel_CAF1
Location 21,092,188 – 21,092,300
Length 112
Max. P 0.601421
window14030

overview

Window 0

Location 21,092,188 – 21,092,300
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.56
Mean single sequence MFE -19.23
Consensus MFE -11.44
Energy contribution -11.55
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -2.16
Structure conservation index 0.59
SVM decision value 0.14
SVM RNA-class probability 0.601421
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21092188 112 + 22224390
AGCCUAAUAACUGUAGUGUUUAUUUCAGAAGAAAUAAAUACAUAUGUACAUAUGUAUGACAGGAACAUAGAACUUCAAAAAUACACAUUUCAUAAG--------CAUUGACCAAAACACA
.((............(((((((((((....))))))))))).((((...((.(((((.....(((........)))....))))).))..)))).)--------)............... ( -17.90)
>DroSec_CAF1 22333 107 + 1
AGCCUAACAAUUGUAAUGGUUAUUUCAGAAGGAAUAAC------------UAUGUAUGACAAGAACAUAAAACUUCAAAAAUACACAUUUAAUAAGUAUGUUGGCAUUGAGCAAAACAU-
.(((.((((.((((.(((((((((((....))))))))------------))).....)))).........((((...((((....))))...)))).)))))))..............- ( -19.90)
>DroSim_CAF1 35709 107 + 1
AGCCUAACAAUUGUAAUGGUUAUUUCAGAAGGAAUAAC------------UAUGUAUGACAAGAACAUAAAACUUCAAAAAUACACAUUUAAUAAGUAUGUUGGCAUUGAGCAAAACAU-
.(((.((((.((((.(((((((((((....))))))))------------))).....)))).........((((...((((....))))...)))).)))))))..............- ( -19.90)
>consensus
AGCCUAACAAUUGUAAUGGUUAUUUCAGAAGGAAUAAC____________UAUGUAUGACAAGAACAUAAAACUUCAAAAAUACACAUUUAAUAAGUAUGUUGGCAUUGAGCAAAACAU_
.(((......((((((((((((((((....))))))))..............(((((.....(((........)))....)))))))))..)))).......)))............... (-11.44 = -11.55 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:28 2006