Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,091,780 – 21,091,875 |
Length | 95 |
Max. P | 0.930570 |
Location | 21,091,780 – 21,091,875 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -34.79 |
Energy contribution | -34.13 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.10 |
Mean z-score | -2.21 |
Structure conservation index | 0.97 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21091780 95 + 22224390 ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGCUCCACG .....((((((((.(((((......(((((((........)))))))((((..((((.......)))).)))).......))))).)))))).)) ( -39.00) >DroSec_CAF1 21929 95 + 1 ACCGUCGGGAGUCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCACCAAAAACCGGUUCGGUUCCACG ((((((((((((...(((((.....))))))))).((.((((((((.((((.......)))))))))))).))......))))..))))...... ( -31.70) >DroSim_CAF1 35302 95 + 1 ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGUUCCACG .....((((((((.(((((......(((((((........)))))))((((..((((.......)))).)))).......))))).)))))).)) ( -36.60) >consensus ACCGUCGGGAGCCCAACUGACACCUUCAGUGCUUCGUUUUGCACUGAGCGCCAACGCAGCGCCAGUGUAGCGCCAAAAACCGGUUCGGUUCCACG .....((((((((.(((((.(((.....)))....((.((((((((.((((.......)))))))))))).)).......))))).)))))).)) (-34.79 = -34.13 + -0.66)
Location | 21,091,780 – 21,091,875 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -39.59 |
Energy contribution | -39.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.97 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21091780 95 - 22224390 CGUGGAGCCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU ((.((((((.(((........((((((.....))))))....(((((((((((((........)))))))..))))))))).))))))))..... ( -44.10) >DroSec_CAF1 21929 95 - 1 CGUGGAACCGAACCGGUUUUUGGUGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGACUCCCGACGGU .((((.((((((......)))))).))))..((((((((((....)))(((((((........))))))).)))))))(((((....)))))... ( -38.70) >DroSim_CAF1 35302 95 - 1 CGUGGAACCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU (((.((((((...)))))...((.(((..((((((((((((....)))(((((((........))))))).)))))))))..))).))).))).. ( -40.20) >consensus CGUGGAACCGAACCGGUUUUUGGCGCUACACUGGCGCUGCGUUGGCGCUCAGUGCAAAACGAAGCACUGAAGGUGUCAGUUGGGCUCCCGACGGU .((((.((((((......)))))).))))..((((((((((....)))(((((((........))))))).)))))))(((((....)))))... (-39.59 = -39.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:28 2006