Locus 8522

Sequence ID X_DroMel_CAF1
Location 21,088,127 – 21,088,231
Length 104
Max. P 0.939856
window14027

overview

Window 7

Location 21,088,127 – 21,088,231
Length 104
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 78.81
Mean single sequence MFE -28.73
Consensus MFE -18.12
Energy contribution -19.57
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -2.26
Structure conservation index 0.63
SVM decision value 1.28
SVM RNA-class probability 0.939856
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21088127 104 + 22224390
AGGAUCUGCGGAAUAUGAACAGUAUUGGAAGAUUCGAGUACAUC---AGGUACCAAAGUGUACCAAAGCCGCCAGUCUUGGAAGAAAAUCUAUUGAAACGGAUCCCA
.((((((((((..........(((((.((....)).)))))...---.(((((......)))))....))))..((.(..(.((.....)).)..).)))))))).. ( -28.80)
>DroSec_CAF1 18159 88 + 1
AGGAUCUGCGGAAAAUGGCCAGUAAUGGAUGAUUCGAGUACAUCCGCGGGUACCAAAGUGUACCAAAGCCGCCAGUGUUGGAACACAC-------------------
.(((((((((((......(((....))).......(....).))))))))).))...((((.((((.((.....)).)))).))))..------------------- ( -28.70)
>DroSim_CAF1 31584 88 + 1
AGGAUCUGCGGAAAAUGGCCAGUAAUGGAUGAUUCGAGUACAUCCGCGGGUACCAAAGUGUACCAAAGCCGCCAGUGUUGGAACACAC-------------------
.(((((((((((......(((....))).......(....).))))))))).))...((((.((((.((.....)).)))).))))..------------------- ( -28.70)
>consensus
AGGAUCUGCGGAAAAUGGCCAGUAAUGGAUGAUUCGAGUACAUCCGCGGGUACCAAAGUGUACCAAAGCCGCCAGUGUUGGAACACAC___________________
.(((((((((((...(....)(((.(.((....)).).))).))))))))).))...((((.((((.((.....)).)))).))))..................... (-18.12 = -19.57 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:26 2006