Locus 8521

Sequence ID X_DroMel_CAF1
Location 21,085,943 – 21,086,062
Length 119
Max. P 0.574544
window14026

overview

Window 6

Location 21,085,943 – 21,086,062
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -21.59
Consensus MFE -15.87
Energy contribution -16.10
Covariance contribution 0.23
Combinations/Pair 1.15
Mean z-score -2.24
Structure conservation index 0.74
SVM decision value 0.08
SVM RNA-class probability 0.574544
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21085943 119 + 22224390
GAUAUUUAAUAUGGUGAAUAAAUCAGGC-AUUAGCAACAGCCUCACUAAAUUACUCACAAUAUUUAAAUCGAAUCUUGUAAAUAGCAAGCCUCGACUAUUUUUGCCACUGCAAUCCAAUC
.......(((((.((((.(((...((((-..........)))).......))).)))).)))))....((((..(((((.....)))))..))))......((((....))))....... ( -18.30)
>DroSec_CAF1 16087 120 + 1
GAUAUUGGAAAUGGUGAACAAAUCGGGAAACCAACAAAAACCUCACCAAAUUACUCACAUUAUUUAAAUCUAAUCUUGCAAAUGACAAGUCUCGACUAUUUUUGCCACUGCAAUCCAAUC
...((((((..((((((.......((....))..........))))))...........................(((((..((.((((...........)))).)).))))))))))). ( -20.83)
>DroSim_CAF1 29503 120 + 1
GAUAUUGGAAAUGGUGAACAAAUCGGGAAACCAACAAAAACCUCACUAAAUUACUCACAUUAUUUAAAUCUAACCUUGCAAAUGGCAAGUCUCGACUAUUUUUGCCACUGCAAUCCAAUC
...((((((..((((((.......((....))..........))))))...........................(((((..(((((((...........))))))).))))))))))). ( -25.63)
>consensus
GAUAUUGGAAAUGGUGAACAAAUCGGGAAACCAACAAAAACCUCACUAAAUUACUCACAUUAUUUAAAUCUAAUCUUGCAAAUGGCAAGUCUCGACUAUUUUUGCCACUGCAAUCCAAUC
...((((((..((((((.......((....))..........))))))...........................(((((..(((((((...........))))))).))))))))))). (-15.87 = -16.10 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:25 2006