Locus 8519

Sequence ID X_DroMel_CAF1
Location 21,083,891 – 21,083,995
Length 104
Max. P 0.528200
window14023

overview

Window 3

Location 21,083,891 – 21,083,995
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 98.08
Mean single sequence MFE -18.63
Consensus MFE -17.65
Energy contribution -17.77
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.95
SVM decision value -0.01
SVM RNA-class probability 0.528200
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21083891 104 - 22224390
AGCUUUUUCACUUCAAUUUUCCAUUUCCGAAUAGGAAAUCCCCAGAUAAAUCAUGUAAAUGCAGAAGUAUUUGCUAGUCGCUCUGUCGCCUACAACUCUGACAA
......................((((((.....))))))...((((........((((((((....))))))))(((.((......)).)))....)))).... ( -16.30)
>DroSec_CAF1 14066 104 - 1
AGCUUUUUCACUUCAAUUUUCCAUUUCCGAAUGGGAAAUCCCCAAAUAAAUCAUGUAAAUGCAGAAGUAUUUGCUAGUCGCUCUGUCACCUACAACUCUGACAA
(((............((((((((((....))))))))))...............((((((((....)))))))).....))).(((((..........))))). ( -19.80)
>DroSim_CAF1 14303 104 - 1
AGCUUUUUCACUUCAAUUUUCCAUUUCCGAAUGGGAAAUCCCCAAAUAAAUCAUGUAAAUGCAGAAGUAUUUGCUAGUCGCUCUGUCACCUACAACUCUGACAA
(((............((((((((((....))))))))))...............((((((((....)))))))).....))).(((((..........))))). ( -19.80)
>consensus
AGCUUUUUCACUUCAAUUUUCCAUUUCCGAAUGGGAAAUCCCCAAAUAAAUCAUGUAAAUGCAGAAGUAUUUGCUAGUCGCUCUGUCACCUACAACUCUGACAA
(((............((((((((((....))))))))))...............((((((((....)))))))).....))).(((((..........))))). (-17.65 = -17.77 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:22 2006