Locus 8517

Sequence ID X_DroMel_CAF1
Location 21,081,976 – 21,082,096
Length 120
Max. P 0.898346
window14021

overview

Window 1

Location 21,081,976 – 21,082,096
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.80
Mean single sequence MFE -31.61
Consensus MFE -29.65
Energy contribution -29.43
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.13
Structure conservation index 0.94
SVM decision value 1.00
SVM RNA-class probability 0.898346
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21081976 120 + 22224390
UCAUUACGGCCAUUGUAUGGGCCCAUUGUAAAAAACAGGACACAGCCAGCGGGCAUGUUCGACCAAAUGGGUCCAUGAAUUAAAUGCGAAUGAGUUGAAUGCCAAUAUAAUAACGAUACA
(((((.((..((((.((((((((((((((.....)).(((((..(((....))).))))).....)))))))))))).....)))))))))))((((.....)))).............. ( -32.20)
>DroSec_CAF1 11922 115 + 1
UCAUUACGGCCAUUGUAUGGGCCCAUUGUAA--AACAGGACACAGCCAGCGGGCAUGUUCGACCAAAUGGGCCAAUGAAUUAAAUGCGAAUGAGUUGAAUGCCAAUAUA---AAGAAUCA
.((((.((((((((((((.((((((((....--....(((((..(((....))).))))).....))))))))..........)))).)))).))))))))........---........ ( -31.32)
>DroSim_CAF1 12052 115 + 1
UCAUUACGGCCAUUGUAUGGGCCCAUUGUAA--AACAGGACACAGCCAGCGGGCAUGUUCGACCAAAUGGGCCAAUGAAAUAAAUGCGAAUGAGUUGAAUGCCAAUAUA---AAGAAACA
.((((.((((((((((((.((((((((....--....(((((..(((....))).))))).....))))))))..........)))).)))).))))))))........---........ ( -31.32)
>consensus
UCAUUACGGCCAUUGUAUGGGCCCAUUGUAA__AACAGGACACAGCCAGCGGGCAUGUUCGACCAAAUGGGCCAAUGAAUUAAAUGCGAAUGAGUUGAAUGCCAAUAUA___AAGAAACA
.((((.((((((((((((.((((((((((.....)).(((((..(((....))).))))).....))))))))..........)))).)))).))))))))................... (-29.65 = -29.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:21 2006