| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,080,511 – 21,080,626 |
| Length | 115 |
| Max. P | 0.951475 |
| Location | 21,080,511 – 21,080,626 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 95.36 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -29.77 |
| Energy contribution | -30.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21080511 115 + 22224390 UGCGAAAUAUUUGCAUAAUUUUCCCAGUCCGAAAUUUUGUUUGGAGACAUUCGGAUCCGGAUUUGGAAUUCGGUAAACAUUCUGACCCAAAAAAUGCCUCCAAUCCCACUAAAAG ............((((....((((.((((((....((((..((....))..))))..)))))).)))).((((........))))........)))).................. ( -23.30) >DroSec_CAF1 10557 115 + 1 UGCGAAAUGUUUGCAUAAUUUUCCCAGUCCGAAAUUCUGUUUGGAGACAUUCGGAUCCGGAUUUGGAAUUCGGCAAACAUGCUGCCCCAAAAAUUGCCUGCAAUCCCUCUAAAAG .(((..((((((((......((((.((((((....((((..((....))..))))..)))))).))))....))))))))..))).......((((....))))........... ( -35.50) >DroSim_CAF1 10702 115 + 1 UGCGAAAUGUUUGCAUAAUUUUCCCAGUCCGAAAUUCUGUUUGGAGACAUUCGGAUCCGGAUUUGGAAUUCGGCAAACAUGCUGCCCCAAAAAAUGCCUGCAAUCCCACUAAAAG .(((..((((((((......((((.((((((....((((..((....))..))))..)))))).))))....))))))))..))).............................. ( -34.70) >consensus UGCGAAAUGUUUGCAUAAUUUUCCCAGUCCGAAAUUCUGUUUGGAGACAUUCGGAUCCGGAUUUGGAAUUCGGCAAACAUGCUGCCCCAAAAAAUGCCUGCAAUCCCACUAAAAG .(((..((((((((......((((.((((((....((((..((....))..))))..)))))).))))....))))))))..))).............................. (-29.77 = -30.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:20 2006