| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,079,674 – 21,079,783 |
| Length | 109 |
| Max. P | 0.602658 |
| Location | 21,079,674 – 21,079,783 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.53 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -20.27 |
| Energy contribution | -19.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21079674 109 - 22224390 AAUAUGUAGAAAAAUGUGUGCCACAUAAAAUGUU----CAUACUUCUUGGGGGGCAGUGAGCAAGGGGUAUGUGGCAUGGGACAACAUUA------UAGGAGGUGACAAAUCAAACAAA ....(((.....(((((((((((((((...((((----(((.((((....))))..))))))).....))))))))))......))))).------.....(....).......))).. ( -27.80) >DroSec_CAF1 9710 116 - 1 AAUAUGUACAAAAAUGUGUGCCACGUAAAAUGUUUCUACAUACUUUU--GGAGGCGGCGAGCAAGGGGUAUGUGGCAUGGG-CAGGAUUAGGGGAUUAGGAGGUGACAAAUCACACAAA ..............((((((((.(.(((..(((((((((((((((((--....((.....)).))))))))))))...)))-))...))).))).......(....)....)))))).. ( -29.40) >DroSim_CAF1 9841 107 - 1 AAUAUGUACAAAAAUGUGUGCCACGUAAAAUGUUUCUACAUACUUCU--GGAGGCGGCGAGCAAGGGGUAUGUGGCAUG-G-CAGGA--------UUAGGAGGUGACAAAUCAAACAAG ..............(((.((((.(.(((..((((.((((((((((((--....((.....)).))))))))))))...)-)-))...--------))).).)))))))........... ( -26.90) >consensus AAUAUGUACAAAAAUGUGUGCCACGUAAAAUGUUUCUACAUACUUCU__GGAGGCGGCGAGCAAGGGGUAUGUGGCAUGGG_CAGGAUUA_____UUAGGAGGUGACAAAUCAAACAAA ..............((((((((((((...(((......)))((((((......((.....)).))))))))))))))).......................(....).......))).. (-20.27 = -19.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:18 2006