| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,079,374 – 21,079,491 |
| Length | 117 |
| Max. P | 0.785971 |
| Location | 21,079,374 – 21,079,491 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 95.42 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -23.63 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21079374 117 - 22224390 UAGUAAUACUUUAGAGGGUAUGACACAUGCCCGUUUUCUUUGCAUAGUUUUUUCCCUGUUUUUCUCGUUGCUGUAUGCGGCAAAAACAAAAGAAAACCACAAGCGAAAACAAAAAAA ...............(((((((...)))))))((((((((((....(((((((...(((((((...(((((.....))))))))))))..)))))))..)))).))))))....... ( -29.20) >DroSec_CAF1 9404 115 - 1 UAGUAAUACUUUAGAGGGUAUGUCACAUGCCCGUUUUCUUUGCAUAGUUU-UUCCUUGUUUUUCUCCUUGCUGGAUGCGGCAAAAACAAAAGAAAACCUCAAGCGAAAACAAA-AAA ...............(((((((...)))))))((((((((((....((((-((..(((((((......(((((....))))))))))))..))))))..)))).))))))...-... ( -29.00) >DroSim_CAF1 9548 115 - 1 UAGUAAUACUUUAGAGGGUAUAUCACAUGCCCGUUUUCUUUGCAUAGUUU-UUCCUUGUUUUUCUCCUUGCUGGAUGCGGCAAAAACAAAAGAAAACCACAAGCGAAAACAAA-AAA ...............((((((.....))))))((((((((((....((((-((..(((((((......(((((....))))))))))))..))))))..)))).))))))...-... ( -27.30) >consensus UAGUAAUACUUUAGAGGGUAUGUCACAUGCCCGUUUUCUUUGCAUAGUUU_UUCCUUGUUUUUCUCCUUGCUGGAUGCGGCAAAAACAAAAGAAAACCACAAGCGAAAACAAA_AAA ...............((((((.....))))))((((((((((....((((.....(((((((......(((((....))))))))))))....))))..)))).))))))....... (-23.63 = -23.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:17 2006