Locus 8511

Sequence ID X_DroMel_CAF1
Location 21,076,382 – 21,076,487
Length 105
Max. P 0.888048
window14015

overview

Window 5

Location 21,076,382 – 21,076,487
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 68.98
Mean single sequence MFE -28.88
Consensus MFE -6.88
Energy contribution -7.48
Covariance contribution 0.60
Combinations/Pair 1.17
Mean z-score -2.12
Structure conservation index 0.24
SVM decision value 0.95
SVM RNA-class probability 0.888048
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21076382 105 - 22224390
CAAUUUAUA-GUUGAGCUGCCUGCAAAUGCAGC-------------CUGUCUUGCUAUGGA-AGAAAUUGCAUUUCAUUGUUGAUUUGGAUAUUUCUCUAAUGGUCAUUGGUCUGUCCGA
...((((((-((.(((((((........)))))-------------...))..))))))))-(((((((.((..(((....)))..)).).))))))....(((.((......)).))). ( -23.20)
>DroPse_CAF1 80125 91 - 1
UAUCCCCCC-GUCGAGC----------UACGGC-------------UUGU---GCUAUGGAAACAAAUCCCAUUUCAUUGUUGAUUUGGAUAUUUUCCUAAUGGGCGGGGACCCCUCC--
..(((((((-(((((((----------....))-------------))).---))...(((((...((((.(..(((....)))..)))))..))))).....)).))))).......-- ( -30.60)
>DroSec_CAF1 6435 103 - 1
CAAUUUAUA-GUUGAGCUGGCUGCAAAUGCAGC-------------CUGUCU--UGCUGGA-AGAAAUUGCAUUUCAUUGUUGAUUUGGAUAUUUCUCUAAUGGUCUUUGGUGUGUCCGA
((((((.((-((...((.((((((....)))))-------------).))..--.))))..-..))))))....(((....))).((((((((....((((......)))).)))))))) ( -28.60)
>DroSim_CAF1 6406 104 - 1
CAAUUUAUA-GUUGAGCUGGCUGCAUUUGCAGC-------------UUGGAA-GCUAUGGA-AGAAAUUGCAUUUCAUUGUUGAUUUGGAUAUUUCUCUAAUGGUCUUUGGUGUGUCCGA
...((((((-(((.....((((((....)))))-------------)....)-))))))))-.(((((...))))).........((((((((....((((......)))).)))))))) ( -27.80)
>DroPer_CAF1 84416 105 - 1
UAUCCCCCCAGUCGAGC----------UACGGCUCUGCGGUACUCCUUGU---GCUAUGGAAACAAAUCCCAUUUCAUUGUUGAUUUGGAUAUUUUCCUAAUGGGCGGAGACCCCUCC--
..(((.((((((.((((----------....)))).))(((((.....))---)))..(((((...((((.(..(((....)))..)))))..)))))...)))).))).........-- ( -34.20)
>consensus
CAAUUUAUA_GUUGAGCUG_CUGCA__UGCAGC_____________UUGU___GCUAUGGA_AGAAAUUGCAUUUCAUUGUUGAUUUGGAUAUUUCUCUAAUGGUCGUUGGUCUGUCCGA
..........((((...............))))........................((((.(((.(((.((..(((....)))..))))).))).))))..((.(((....))).)).. ( -6.88 =  -7.48 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:15 2006