Locus 8510

Sequence ID X_DroMel_CAF1
Location 21,076,126 – 21,076,224
Length 98
Max. P 0.514407
window14014

overview

Window 4

Location 21,076,126 – 21,076,224
Length 98
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 88.01
Mean single sequence MFE -42.60
Consensus MFE -34.79
Energy contribution -35.30
Covariance contribution 0.51
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.514407
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21076126 98 - 22224390
UCGUAGGGCUGGAA----------------UCUGGAAUCUAGCCCGAAUGCUGGCCACUUUUUCGGCCAGUGUAGGCAUUAGCUGUCGGCUUGAAUGGCCGUCUGGUCGGUCCG
.....((((((((.----------------.......))))))))..(((((((((........))))))))).((.((..((((.(((((.....))))).).)))..)))). ( -43.40)
>DroSec_CAF1 6170 114 - 1
UCGUAGGGUAGAAGAGCUUCGUUCGAGCUUUCUGGAAUCUAGCCCGAAUGCUGGCCACUUUUUCGGCCAGUGUAGGCAUUAGCUGUCGGCUUGAAUGGCCGUCUGGUCGGUCCG
.....((((((((((((((.....)))))))......))).))))..(((((((((........))))))))).((.((..((((.(((((.....))))).).)))..)))). ( -41.80)
>DroSim_CAF1 6157 114 - 1
UCGUAGGGUAGAAGAGGUUCGUUCGAGCUUUCUGGAAUCUAGCCCGAAUGCUGGCCACUUUUUCGGCCAGUGUAGGCAUUAGCUGUCGGCUUGAAUGGCCGUCUGGUCGGUCCG
.....(((((((((((((((....)))).))))....))).))))..(((((((((........))))))))).((.((..((((.(((((.....))))).).)))..)))). ( -42.60)
>consensus
UCGUAGGGUAGAAGAG_UUCGUUCGAGCUUUCUGGAAUCUAGCCCGAAUGCUGGCCACUUUUUCGGCCAGUGUAGGCAUUAGCUGUCGGCUUGAAUGGCCGUCUGGUCGGUCCG
.....(((((((.(((((((....)))))))......))).))))..(((((((((........))))))))).((.((..((((.(((((.....))))).).)))..)))). (-34.79 = -35.30 +   0.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:14 2006