Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,417,830 – 2,417,937 |
Length | 107 |
Max. P | 0.512517 |
Location | 2,417,830 – 2,417,937 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -13.38 |
Energy contribution | -14.50 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.31 |
Structure conservation index | 0.55 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2417830 107 + 22224390 AAAAUCAUAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCUGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC-A ............-.(((...(.((....)).)(((((-((....(((((........))))).-.))))))).................................))).-. ( -25.60) >DroSim_CAF1 25273 107 + 1 AAAAUCACAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCCGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC-A ............-.(((...(.((....)).)(((.(-((....(((((........))))).-.))).))).................................))).-. ( -21.00) >DroEre_CAF1 63730 108 + 1 AAAAUCAUAGCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAUUUCGCCGGCGUUGGAAAAAAUACAAACAAUAAUUAAAAACUUUCCU-A ............-((((...(.((....)).).((((-((((....(((.....)))(((......)))))))))))............................))))-. ( -28.90) >DroYak_CAF1 64660 107 + 1 AAAAUCAUACCA-AGGACAACAAGGAAACUCGGCCAG-CGCCAUUGGUCAUUUUGGCGGCCAU-UCGCCGGCGCUCGCAAAAAUACAAACAAUAAUUAAAAACUUUCCU-A ............-((((...(.((....)).)((.((-((((....(((.....)))(((...-..))))))))).))...........................))))-. ( -28.40) >DroAna_CAF1 70858 96 + 1 U-AGGCAAGGCAGAAAAAAAAAAAGAAAGUCGGCCAACCGCCGUUGGUCAUUUUGGCGGCCA--------------GCGAAAAUACAAAUAAUAAUUAAAAACUUUACCCA .-.((.((((.....................(((((((....)))))))(((((.((.....--------------)).)))))..................)))).)).. ( -18.20) >consensus AAAAUCAUAGCA_AGGACAACAAGGAAACUCGGCCAG_CGCCAUUGGUCAUUUUGGCGGCCAU_UCGCCGGCGUACGAAAAAAUACAAACAAUAAUUAAAAACUUUCCC_A .......................(((((...((((((......)))))).....(.((((......)))).)...............................)))))... (-13.38 = -14.50 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:17 2006