Locus 8509

Sequence ID X_DroMel_CAF1
Location 21,075,425 – 21,075,528
Length 103
Max. P 0.619095
window14013

overview

Window 3

Location 21,075,425 – 21,075,528
Length 103
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.80
Mean single sequence MFE -22.93
Consensus MFE -17.15
Energy contribution -18.43
Covariance contribution 1.28
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.619095
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21075425 103 - 22224390
UGAAUGCGCUUUAAUAUAAAGUA-----------------ACUAACUUCAUAAUGGCGUACAAAUGAGAUAUUUAGUGAGUCCCAAAGUUAAGGGCGAAAUAAUUUAAGGAUUUUCAAAA
((((((((((....(((.((((.-----------------....)))).)))..))))))....((((.(((((.....(.(((........)))).))))).))))......))))... ( -15.80)
>DroSec_CAF1 5476 118 - 1
UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU--AAAA
......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.(((..((.......))..))).)))))))))).......--.... ( -26.50)
>DroSim_CAF1 5468 118 - 1
UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU--AAAA
......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.(((..((.......))..))).)))))))))).......--.... ( -26.50)
>consensus
UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU__AAAA
......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.((...((.......))...)).))))))))))............. (-17.15 = -18.43 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:13 2006