| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,073,516 – 21,073,701 |
| Length | 185 |
| Max. P | 0.865747 |
| Location | 21,073,516 – 21,073,629 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 93.41 |
| Mean single sequence MFE | -32.82 |
| Consensus MFE | -29.89 |
| Energy contribution | -29.23 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073516 113 + 22224390 AGUACGAGUAUCUGUGUGUAACUACUGUGCAUCUGUGUGCGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUACAUACAUCGCAUCUAUGCUGCCGU ...(((.(((..((((((((......((((..((((((((((...((((((....))))))))).)))))))..)))).........))))))))..(((....))))))))) ( -33.36) >DroSec_CAF1 3530 108 + 1 AGUACGAGUAUCUGUGUA-----ACAGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGACACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU ...(((.(((((((((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...)))))).).))))...(((....)))...))) ( -33.50) >DroSim_CAF1 3618 108 + 1 AGUACGAGUAUCUGUGUA-----ACUGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU ...(((.(((((((((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...)))))).).))))...(((....)))...))) ( -31.60) >consensus AGUACGAGUAUCUGUGUA_____ACUGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU .(((((.(((...(((..........((((..((((((((((...((((((....))))))))).)))))))..)))))))))).))))).......(((....)))...... (-29.89 = -29.23 + -0.66)
| Location | 21,073,589 – 21,073,701 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 97.62 |
| Mean single sequence MFE | -36.53 |
| Consensus MFE | -36.08 |
| Energy contribution | -35.63 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073589 112 - 22224390 GAAAAUGGCAACAAUUCUGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUGAGGCACUACGGCAGCAUAGAUGCGAUGUAUGUACGUGUAGUGGUGCG .....((....)).(((((((.(((((((((.(.((........)).).))))).)))))))).)))(((((((.((((((((.((...)).)))))...))).))))))). ( -37.00) >DroSec_CAF1 3598 112 - 1 GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). ( -36.30) >DroSim_CAF1 3686 112 - 1 GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). ( -36.30) >consensus GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). (-36.08 = -35.63 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:12 2006