Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,073,165 – 21,073,276 |
Length | 111 |
Max. P | 0.716510 |
Location | 21,073,165 – 21,073,276 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -16.84 |
Energy contribution | -17.07 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.25 |
Structure conservation index | 0.66 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073165 111 - 22224390 CAAAAGAGCACAGAA-------AACGGAAAACUGGAAAAAAACAAACCGAAUAAAAUUUGUAUAAACUGAUCCGAACUCAGAUUUGUGCAAGUCCGAAAUGGAAAACUCGUGUU--CGGA .....((((((....-------..((((....(((...........))).......((((((((((((((.......)))).)))))))))))))).....((....)))))))--)... ( -24.40) >DroEre_CAF1 43554 114 - 1 CAAAAGAGCACGGAAAACGGAAAACGGAAAACUGGAA-AAAGCAAGCCGACUAAAAUUUGUAUAAACCGAG-U--GUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUG--CGGA .......(((((......((....(((....((....-..))....)))((........)).....))(((-(--.(((((((((....))))))))).......)))).))))--)... ( -26.70) >DroYak_CAF1 49363 118 - 1 CAAAAGAGCACGGAAUAUGAGGAACGGAAAACUGGAA-AAAACAAACCGAAUAAAAUUUGUAUAAACUGAG-UGAGUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUGUUCGCA .....((((((((...........(((....)))...-........))....................(((-(...(((((((((....))))))))).......))))..))))))... ( -25.45) >consensus CAAAAGAGCACGGAA_A_G___AACGGAAAACUGGAA_AAAACAAACCGAAUAAAAUUUGUAUAAACUGAG_UGAGUUCGGAUUUGGGCAAGUCCGAAAUGGAAAACUCGUGUG__CGGA .......((((((...........(((....)))............(((......((((((.(((((((((.....))))).)))).))))))......))).....))))))....... (-16.84 = -17.07 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:10 2006