Locus 8506

Sequence ID X_DroMel_CAF1
Location 21,072,069 – 21,072,188
Length 119
Max. P 0.645262
window14009

overview

Window 9

Location 21,072,069 – 21,072,188
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.43
Mean single sequence MFE -32.34
Consensus MFE -27.84
Energy contribution -28.73
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -2.06
Structure conservation index 0.86
SVM decision value 0.23
SVM RNA-class probability 0.645262
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21072069 119 + 22224390
CUUCAUUAUUUAAUUUUCCGCGCAUCGGCGGCA-GCUUCGGCCUCGCGGAAAACCCUCGGAAAAGUCCUUGCGAAAAUUCCUGCCUUCGUUUCAAUUAAUUUUCGCGACAUUGAUGCGCC
...................((((((((((((..-((....)).((((((.....))..(((....)))..))))......))))).((((..............))))....))))))). ( -33.44)
>DroEre_CAF1 42520 120 + 1
CUUCAUUAUUUCAUUUUCCGCGCAUCGACUGCAAGCGUUGGCCUCGCGGAAAACCCUCGGAAAAGUCCUUGCGAAAAUUCCAGCCUUCGUUUCAAUUAAUUUUCGCGACAUUGAUGCGCC
...................(((((((((((((.((.(....))).)))).........(((....)))(((((((((((..................)))))))))))..))))))))). ( -29.97)
>DroYak_CAF1 48295 119 + 1
CUUCAUUAUUUCAUUUUCCGCGCAUCGACUGCA-GCUUUGGCCUCGCGGAAAACCAUCGCGAAAGUCCUUGCGAAAAUUCCAGCCUUCGUUUCAAUUAAUUUUCGCGACAUUGAUGCGCC
...................(((((((((((((.-((....))...)))).......((((((((((....(((((..........)))))........))))))))))..))))))))). ( -33.60)
>consensus
CUUCAUUAUUUCAUUUUCCGCGCAUCGACUGCA_GCUUUGGCCUCGCGGAAAACCCUCGGAAAAGUCCUUGCGAAAAUUCCAGCCUUCGUUUCAAUUAAUUUUCGCGACAUUGAUGCGCC
...................(((((((((......((....)).(((((((((......(((....)))..(((((..........))))).........)))))))))..))))))))). (-27.84 = -28.73 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:10 2006