Locus 8502

Sequence ID X_DroMel_CAF1
Location 21,069,142 – 21,069,245
Length 103
Max. P 0.508771
window13999

overview

Window 9

Location 21,069,142 – 21,069,245
Length 103
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.39
Mean single sequence MFE -31.27
Consensus MFE -22.98
Energy contribution -23.98
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.508771
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21069142 103 + 22224390
AAGUUUCGCUCGGCCAUAAGUUUGUGCAGCGGCCAUAGCAAC----------ACAACAACAAUGGC-------AAGAGCAACGACGGCCAUUUGGAGUCGCACAUUAGGCCAGGAAAGUU
((.((((.((.((((.(((...(((((.((.(((((......----------.........)))))-------....))...(((..((....)).))))))))))))))))))))).)) ( -31.76)
>DroSim_CAF1 25219 110 + 1
AAGUUUCGCUCGGCCAUAAGUUUGUGCAGCGGCCAUAGCAACAGCAACACACACAACAACAAUGGC-------AAGAGCAA---CGGCCAUUUGGAGUCGCACAUUAGGCCAGGAAAGUU
((.((((((((.(((((..(((((((..((.((....))....))..))))...)))....)))))-------..))))..---.((((...((........))...))))..)))).)) ( -30.70)
>DroEre_CAF1 39665 116 + 1
AAGUUUCGCUCGGCCAUAAGUUUGUGCAGCG-CCAGAGCAACAGCAACACACACAACAACCAGGGCAACACACAAAAGCAA---CGGCCAUUUGGAGUCGCACAUUAGGCCAGGAAAGUU
((.((((.((.((((.(((...(((((.((.-(((((((....))..................(((...............---..))).))))).)).)))))))))))))))))).)) ( -29.73)
>DroYak_CAF1 45416 110 + 1
AAGUUUCGCUCGGCCAUAAGUUUGUGCAGCGGCCAGAGCAACGGCAACACACACAGCAACAAAGGC-------GAAAGCAA---CGGCCAUUUGGAGUCGCACAUUAGGCCAGGAAAGUU
((.((((.((.((((.(((...(((((.((..(((((....((((..........)).......((-------....))..---))....))))).)).)))))))))))))))))).)) ( -32.90)
>consensus
AAGUUUCGCUCGGCCAUAAGUUUGUGCAGCGGCCAGAGCAACAGCAACACACACAACAACAAUGGC_______AAAAGCAA___CGGCCAUUUGGAGUCGCACAUUAGGCCAGGAAAGUU
((.((((.((.((((.(((...(((((.((..(((((((....))..................(((....................))).))))).)).)))))))))))))))))).)) (-22.98 = -23.98 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:01 2006