Locus 8501

Sequence ID X_DroMel_CAF1
Location 21,068,989 – 21,069,102
Length 113
Max. P 0.608816
window13998

overview

Window 8

Location 21,068,989 – 21,069,102
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.10
Mean single sequence MFE -17.44
Consensus MFE -13.25
Energy contribution -14.50
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.76
SVM decision value 0.15
SVM RNA-class probability 0.608816
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21068989 113 + 22224390
UGCACAUUUUCCCUCACUGCCUGGAUUUAUGAUCAUUUCAUUUCCUCGAGUCCCAGCCACUUCUUCGGC-----CC--ACGCCAUCUUCUUCUUCUUCAGUCCUUGUUGUGUAUAUCCUC
((((((............((..((((((((((.....))))......))))))..)).........(((-----..--..)))........................))))))....... ( -17.40)
>DroSim_CAF1 25071 108 + 1
UGCACAUUUCCCCUUCCUGCCUGGAUUUAUGAUCAUUUCAUUUCCUCGAGUCCCAGCCACUUCUUCGGC-----CC--CCGCC-----CGGCUUCUUCAGUCCUUGUUGUGUAUAUCCUC
((((((............(((.(((...((((.....)))).)))..(.((....(((........)))-----..--..)).-----))))...............))))))....... ( -18.33)
>DroEre_CAF1 39510 115 + 1
UGCACAUUUCCUCUUCCUGCCUGGAUUUAUGAUCAUUUCAUUUCCUCGAGUCCCAGCCACUUCUGCAGCAACCACCCCCCGCC-----CGGCUUCUUCAGUCCUUGUUGUGUAUAUCCUC
((((((......((....(((.(((...((((.....)))).)))....((..(((......)))..))..............-----.)))......)).......))))))....... ( -17.22)
>DroYak_CAF1 45266 110 + 1
UGCACAUUUCCCCUUCCUGCCUGGAUUUAUGAUCAUUUCAUUUCCUCGAGUCCCAGCCACCUCUUCAGC-----CCCCCCUCC-----CGGCUUCCUCAGUCCUUGUUGUGUAUAUCCUC
((((((................(((...((((.....)))).)))..(((....((((...........-----.........-----.))))..))).........))))))....... ( -16.80)
>consensus
UGCACAUUUCCCCUUCCUGCCUGGAUUUAUGAUCAUUUCAUUUCCUCGAGUCCCAGCCACUUCUUCAGC_____CC__CCGCC_____CGGCUUCUUCAGUCCUUGUUGUGUAUAUCCUC
((((((................(((...((((.....)))).))).((((..(..(((........)))...........(((......))).......)..)))).))))))....... (-13.25 = -14.50 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:00 2006