Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 337,220 – 337,340 |
Length | 120 |
Max. P | 0.917681 |
Location | 337,220 – 337,340 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.39 |
Mean single sequence MFE | -43.43 |
Consensus MFE | -31.94 |
Energy contribution | -33.30 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.74 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 337220 120 - 22224390 CCCCGAUCAGCCUAGCUCAGUGUCCUGUGGCAGGAUCUAAUCCAGGCCAUCAUUAGCUAUCGCGCGGAAAGAAAGCUGACACAGGACAUAAGUGAAACGGAGGUGGAUGGUUUGGCGGAC (((((((((..(((.(((.((((((((((((.((((...))))..)))....((((((.((.........)).)))))).)))))))))..(.....).))).))).))).)))).)).. ( -41.90) >DroSec_CAF1 3502 120 - 1 GACCGAGCAGCCCAGCUCAGUGCCCUUUGCCAGGAUCUCAUCCAGGCCAUCGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGCGGAC (.((((((...(((((((.((((((.......((((...)))).(((((....)))))...))))..............(((.........)))..)).)))))))...))))))).... ( -41.60) >DroSim_CAF1 2649 102 - 1 GACCGAGCAGCCCAGCUCAGUGUCCUGUGCCC------------------UGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGUGGAC .(((((((...(((((((.((((((((((..(------------------((((..((.((.....)).))..))))).))))))))))..(.....).)))))))...))))))).... ( -46.80) >consensus GACCGAGCAGCCCAGCUCAGUGUCCUGUGCCAGGAUCU_AUCCAGGCCAUCGUUGGCUAUCGGGCGGAAAGAAAGCAGACACAGGACAUAAGUGAAACGGAGCUGGAUGGUUUGGCGGAC ..((((((...(((((((.((((((((((...(((.....)))............(((.((.........)).)))...))))))))))..(.....).)))))))...))))))..... (-31.94 = -33.30 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006