| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,061,396 – 21,061,513 |
| Length | 117 |
| Max. P | 0.522649 |
| Location | 21,061,396 – 21,061,513 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.39 |
| Mean single sequence MFE | -47.73 |
| Consensus MFE | -37.76 |
| Energy contribution | -37.43 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21061396 117 - 22224390 UUUGGGCUUGGCCAAGGAAAAGCCGGUGAAAAAGUC---GCGGGUGACCUUCAAGAAGUCACAUCGUCGGCCGCUGGACGCCAUGCAAUCCCUUGGGAUGUCCCGCAGGACCAGACUCAU ..((((..(((((........((((((((.....))---))(((((((.((....))))))).))..)))).((.((((((...)).((((....)))))))).)).)).)))..)))). ( -40.60) >DroEre_CAF1 32501 117 - 1 UUUGGGCUUGGCCAAGGUAAGGCCGGUGAAACGGCC---GCGUGUGACCGUCAAGAAGUCGCAUCCUCAGCCGCUGGACGCCCUGCAAUCCCUGGGCAUGUCCCGCAGGACCAAACUCAU ..((((.((((((..(((..(((((......)))))---(.(((((((.........))))))).)...)))((.((((((((..........))))..)))).)).)).)))).)))). ( -48.90) >DroYak_CAF1 35471 120 - 1 UUUGGGCUUGGCCAAGGUCAGGCCGGUGAAGAAGUCGCAGCAAGUGACCUUCAAGAAGUCGCAUCGCCAGCCGCUGGACGCCCUGCAAUCCCUGGGCAUGUCCCGCAGGACCAAGCUCAU ..(((((((((((.......(((.(((((.((((((((.....)))).))))..(....)...))))).)))((.((((((((..........))))..)))).)).)).))))))))). ( -53.70) >consensus UUUGGGCUUGGCCAAGGUAAGGCCGGUGAAAAAGUC___GCGAGUGACCUUCAAGAAGUCGCAUCGUCAGCCGCUGGACGCCCUGCAAUCCCUGGGCAUGUCCCGCAGGACCAAACUCAU ..((((.((((((.......(((.(((((....((....))..(((((.........))))).))))).)))((.((((((((..........))))..)))).)).)).)))).)))). (-37.76 = -37.43 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:44 2006