Locus 8494

Sequence ID X_DroMel_CAF1
Location 21,060,256 – 21,060,395
Length 139
Max. P 0.996602
window13976 window13977 window13978

overview

Window 6

Location 21,060,256 – 21,060,355
Length 99
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.20
Mean single sequence MFE -16.50
Consensus MFE -16.15
Energy contribution -15.93
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.98
SVM decision value 2.72
SVM RNA-class probability 0.996602
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21060256 99 + 22224390
---------------------UCCCCCAUCUCCCAAAACCGAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCGAAUAAGCCAAACGCGAAAUG
---------------------.....(((.((.(...((..(((((((......((((.....))))......)))))))..)).....((((.(((....))).))))...).)).))) ( -16.20)
>DroEre_CAF1 31372 97 + 1
---------------------UCCCCCAUCUCCCAAAACCCAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCAAAUAAACCAAC--CGAAAUG
---------------------....................(((((((......((((.....))))......)))))))...((((((((((.(((....))).))))..--.)))))) ( -16.50)
>DroYak_CAF1 34321 118 + 1
UCUCCCGUCUCCCAUCUGCCAUCUGCCAUCUCCCAAAACCCAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUACAAAUAAACCAAC--CGAAAUG
.........................................(((((((......((((.....))))......)))))))...((((((((((.(((....))).))))..--.)))))) ( -16.80)
>consensus
_____________________UCCCCCAUCUCCCAAAACCCAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCAAAUAAACCAAC__CGAAAUG
.........................................(((((((......((((.....))))......)))))))...((((((((((.(((....))).)))).....)))))) (-16.15 = -15.93 +  -0.22)

alignment

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secondary structure

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dotplot

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Window 7

Location 21,060,256 – 21,060,355
Length 99
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.20
Mean single sequence MFE -26.60
Consensus MFE -20.92
Energy contribution -21.70
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.79
SVM decision value 0.72
SVM RNA-class probability 0.832757
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21060256 99 - 22224390
CAUUUCGCGUUUGGCUUAUUCGGACAUACCAGAAAUACAUAUUCCCAAAUGAAAUUGUUGGACAAUAUGAAAUGGGAAUCGGUUUUGGGAGAUGGGGGA---------------------
((((((..((((((.....))))))...((((((...(..(((((((..(.(.((((.....)))).).)..))))))).).)))))))))))).....--------------------- ( -24.60)
>DroEre_CAF1 31372 97 - 1
CAUUUCG--GUUGGUUUAUUUGGACAUACCAGAAAUACAUAUUCCCAAAUGAAAUUGUUGGACAAUAUGAAAUGGGAAUGGGUUUUGGGAGAUGGGGGA---------------------
((((((.--(((.(......).)))...((((((...(.((((((((..(.(.((((.....)))).).)..))))))))).)))))))))))).....--------------------- ( -24.70)
>DroYak_CAF1 34321 118 - 1
CAUUUCG--GUUGGUUUAUUUGUACAUACCAGAAAUACAUAUUCCCAAAUGAAAUUGUUGGACAAUAUGAAAUGGGAAUGGGUUUUGGGAGAUGGCAGAUGGCAGAUGGGAGACGGGAGA
..((((.--(((..(((((((((.(((.((((((...(.((((((((..(.(.((((.....)))).).)..))))))))).))))))...))).......))))))))).))).)))). ( -30.50)
>consensus
CAUUUCG__GUUGGUUUAUUUGGACAUACCAGAAAUACAUAUUCCCAAAUGAAAUUGUUGGACAAUAUGAAAUGGGAAUGGGUUUUGGGAGAUGGGGGA_____________________
((((((...(((.(......).)))...((((((.....((((((((..(.(.((((.....)))).).)..))))))))..)))))))))))).......................... (-20.92 = -21.70 +   0.78)

alignment

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secondary structure

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dotplot

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Window 8

Location 21,060,275 – 21,060,395
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.72
Mean single sequence MFE -28.83
Consensus MFE -22.75
Energy contribution -22.87
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.35
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.609508
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21060275 120 + 22224390
GAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCGAAUAAGCCAAACGCGAAAUGUAAAUGUUUCGCGUUCGUUUCGAAGUUGUGCAAGGAAGUA
.......(((((...((((...((((((((((((((..((((.........))))..))))))((((..((((((((((......)))))))))).)))).)))))))))))).))))). ( -32.90)
>DroEre_CAF1 31391 117 + 1
CAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCAAAUAAACCAAC--CGAAAUGAAAAUGUUUCGCGUUCGCUUCAAACUUGUGCAAAGAAGU-
.(((((((......((((.....))))......)))))))....(((((((((.(((....))).)))(((--((((((......)))))).))).((..((....)).))..))))))- ( -23.20)
>DroYak_CAF1 34361 117 + 1
CAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUACAAAUAAACCAAC--CGAAAUGAAAAUGUUUCGCGUUCGUUUCAAAGUUGUGCAAAGAAGU-
.(((((((......((((.....))))......)))))))....((((((....(((((((..((((.(((--((((((......)))))).))).)))).....))))))).))))))- ( -30.40)
>consensus
CAUUCCCAUUUCAUAUUGUCCAACAAUUUCAUUUGGGAAUAUGUAUUUCUGGUAUGUCCAAAUAAACCAAC__CGAAAUGAAAAUGUUUCGCGUUCGUUUCAAAGUUGUGCAAAGAAGU_
.(((((((......((((.....))))......))))))).(((((...((((.(((....))).)))).....((((((..((((.....))))))))))......)))))........ (-22.75 = -22.87 +   0.11)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:43 2006