Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,054,048 – 21,054,161 |
Length | 113 |
Max. P | 0.549912 |
Location | 21,054,048 – 21,054,161 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -23.55 |
Energy contribution | -23.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.93 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21054048 113 - 22224390 AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUGUAUUGUGUGUUACGCAUACCAAUGCAUA-------UAGCAAA .....((((((((.....(((((.((((..((....))...))))........)))))......))))........(((((((((((.....)))).)))))))..-------.)))).. ( -28.10) >DroEre_CAF1 25078 120 - 1 AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGCUACGCAUACCCAUGCAUACUCGUUACACCAAA ...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............((((((...))))))....))))).............. ( -24.60) >DroYak_CAF1 27829 113 - 1 AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGUUACGCAUACCCGUGCAUA-------UACCAAA ...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............(((((.....)))))....)))))-------....... ( -23.60) >consensus AAUUAUGCUGCCCAGCUCUGCGCCGUCAACUCUCCUGACCCUGACAAAUUUAUGCGCAUCAUUAGGGCCAAAUAACUAUAUUGUGUGUUACGCAUACCCAUGCAUA_______UACCAAA ...(((((.((((.....(((((.((((..((....))...))))........)))))......))))..............((((((...))))))....))))).............. (-23.55 = -23.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:38 2006