Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,415,564 – 2,415,661 |
Length | 97 |
Max. P | 0.655246 |
Location | 2,415,564 – 2,415,661 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.52 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -18.84 |
Energy contribution | -18.65 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.22 |
Mean z-score | -1.61 |
Structure conservation index | 0.79 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2415564 97 - 22224390 UUCAUCUAAUUGUGCUUUGAUUAGGUGUAAAAGGCAUGUUGGCCUAAUUGGCAGUAAAUGAAAUUGAUAUUGCAAAUGAAAAGCAUUUGUGGCUUGC ..((((((((((.....))))))))))....((((......(((.....)))...................(((((((.....))))))).)))).. ( -21.80) >DroSec_CAF1 57608 96 - 1 UUCACCUAAUUGUGCUUUGAUUAGGUGUAUAAGGAAUGCUGGCCUAAUUGGCAGUAACUGAAAUUGAAAUUGCA-AUGAAAAGCAUUUGUGGCUUGC ..((((((((((.....))))))))))....(.(((((((.(((.....)))..........((((......))-))....))))))).)....... ( -23.20) >DroEre_CAF1 61518 97 - 1 UUCAUCUAAUUGCACUUUGAUUAGGUGUAUAAGGCAUGCUGCCCUAAUUGGCAGUGACAGAAAUUGAUAUUGCUAAUGAAAAGCAUUUGCGGUUUGC ..(((((((((.......)))))))))......(((((((......((((((((((.(((...))).))))))))))....))))..)))....... ( -24.50) >DroYak_CAF1 62003 97 - 1 UUCAUUAAAUUGCACUUUGAUUAGGUGUAUAAGGCUUGCUGCCCUAAUUGGCAGUAACUGAAAUUGAUAUUGCAAAUGAAGAGCAUUUGUGGUUUGC ...(((((..(((((((.....)))))))...((.((((((((......))))))))))....)))))((..((((((.....))))))..)).... ( -26.40) >consensus UUCAUCUAAUUGCACUUUGAUUAGGUGUAUAAGGCAUGCUGCCCUAAUUGGCAGUAACUGAAAUUGAUAUUGCAAAUGAAAAGCAUUUGUGGCUUGC ..(((((((((.......)))))))))....((((.(((((.((.....)))))))...............(((((((.....))))))).)))).. (-18.84 = -18.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:15 2006