Locus 8489

Sequence ID X_DroMel_CAF1
Location 21,050,950 – 21,051,070
Length 120
Max. P 0.752461
window13967 window13968

overview

Window 7

Location 21,050,950 – 21,051,070
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.14
Mean single sequence MFE -33.80
Consensus MFE -25.29
Energy contribution -25.07
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.75
SVM decision value 0.48
SVM RNA-class probability 0.752461
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21050950 120 + 22224390
UGUCUUGGAUUUCUUCACUUUAGUUUCCCCAAGGGUUAUAGCCCCCCCUUGGGCUAAGCCCCUGCUUAGCCAGACAAGUUUACUUGUUACACGUAACCAGAGACAGGCAAUUUUUGGAUC
((((((((.....................((((((..........))))))((((((((....)))))))).((((((....))))))........))).)))))............... ( -34.80)
>DroEre_CAF1 21994 108 + 1
-UUCU---------UCGCUUUAGUUUCCCAGGGGGUUAAAGCCC-CC-CUGCGCUAAGCCCCUGCUUAGCCAGAUAAGUUUACUUGUUACACGUAACCAGAGACAGGCAAUUUUUGGAUC
-....---------..((((..(((((...((((((....))))-))-(((.(((((((....))))))))))(((((....)))))............)))))))))............ ( -34.20)
>DroYak_CAF1 24322 110 + 1
UUUCU---------UGGACUUAGUUUCCCGCGGGGUUAAAGCCCCCC-CUGGGCUAAGCCCCUGCUUAGCCAGACAUGUUUACUUGUUACACGUAACCAGAGACAGGCAAUUUUUGGAUC
.....---------...........(((...(((((....))))).(-(((((((((((....))))))))...........((.((((....)))).))...))))........))).. ( -32.40)
>consensus
UUUCU_________UCGCUUUAGUUUCCCAAGGGGUUAAAGCCCCCC_CUGGGCUAAGCCCCUGCUUAGCCAGACAAGUUUACUUGUUACACGUAACCAGAGACAGGCAAUUUUUGGAUC
.........................(((....))).....(((.....(((.(((((((....))))))))))....((((.((.((((....)))).)))))).)))............ (-25.29 = -25.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 21,050,950 – 21,051,070
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.14
Mean single sequence MFE -34.97
Consensus MFE -25.97
Energy contribution -26.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.537765
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21050950 120 - 22224390
GAUCCAAAAAUUGCCUGUCUCUGGUUACGUGUAACAAGUAAACUUGUCUGGCUAAGCAGGGGCUUAGCCCAAGGGGGGGCUAUAACCCUUGGGGAAACUAAAGUGAAGAAAUCCAAGACA
................((((.(((((((.....(((((....)))))..((((((((....))))))))((((((..(....)..))))))((....))...))))......))))))). ( -35.60)
>DroEre_CAF1 21994 108 - 1
GAUCCAAAAAUUGCCUGUCUCUGGUUACGUGUAACAAGUAAACUUAUCUGGCUAAGCAGGGGCUUAGCGCAG-GG-GGGCUUUAACCCCCUGGGAAACUAAAGCGA---------AGAA-
..(((.......((..(((((((.(((.((.....(((....))).....))))).)))))))...)).(((-((-((.......))))))))))...........---------....- ( -33.50)
>DroYak_CAF1 24322 110 - 1
GAUCCAAAAAUUGCCUGUCUCUGGUUACGUGUAACAAGUAAACAUGUCUGGCUAAGCAGGGGCUUAGCCCAG-GGGGGGCUUUAACCCCGCGGGAAACUAAGUCCA---------AGAAA
..............(((.((.(((((((((((.........))))))..))))))))))(((((((((((.(-.((((.......)))).))))...)))))))).---------..... ( -35.80)
>consensus
GAUCCAAAAAUUGCCUGUCUCUGGUUACGUGUAACAAGUAAACUUGUCUGGCUAAGCAGGGGCUUAGCCCAG_GGGGGGCUUUAACCCCCCGGGAAACUAAAGCGA_________AGAAA
............((((.((.(((((((....))))..............((((((((....))))))))))).)).)))).....(((...))).......................... (-25.97 = -26.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:35 2006