Locus 8487

Sequence ID X_DroMel_CAF1
Location 21,049,647 – 21,049,767
Length 120
Max. P 0.697347
window13965

overview

Window 5

Location 21,049,647 – 21,049,767
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.94
Mean single sequence MFE -34.10
Consensus MFE -32.32
Energy contribution -32.36
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 0.34
SVM RNA-class probability 0.697347
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21049647 120 + 22224390
CUCGUAAAUUUAUGAACUUUAUGGCCGGCAACUCCAGAGGCCGCCAGUCGACAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUAUUUAUU
...((((((.((((((((...((((.(((..(....)..)))))))...(((.((((((...((.....))...)))))).)))....................)))))))).)))))). ( -37.30)
>DroSec_CAF1 20006 116 + 1
GUCGUAAAUUUAUGAACUUUAUGGCCGGCAACUCCAGAGGCCGCCAGUCGACAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUA----UU
..........((((((((...((((.(((..(....)..)))))))...(((.((((((...((.....))...)))))).)))....................))))))))..----.. ( -33.60)
>DroSim_CAF1 20573 116 + 1
CUCGUAAAUUUAUGAACUUUAUGGCCGGCAACUCCAGAGGCCGCCAGUCGACAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUA----UU
..........((((((((...((((.(((..(....)..)))))))...(((.((((((...((.....))...)))))).)))....................))))))))..----.. ( -33.60)
>DroEre_CAF1 20794 116 + 1
CUCGUAAAUUUAUGAACUUUAUGGCCGGCAACUCCAGAGGCCGCCAGUCGACAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUA----UU
..........((((((((...((((.(((..(....)..)))))))...(((.((((((...((.....))...)))))).)))....................))))))))..----.. ( -33.60)
>DroYak_CAF1 22653 116 + 1
CUCAUAAAUUUAUGAACUUUAUGGCCAGCAACUCCGGAGGCCGCCAGUCGGCAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUA----UU
..........((((((((...(((...(((...(((..(((.(((....))).)))..)))..((..((((.....))))..)).........)))...)))..))))))))..----.. ( -32.40)
>consensus
CUCGUAAAUUUAUGAACUUUAUGGCCGGCAACUCCAGAGGCCGCCAGUCGACAGUCGACGGUCGAGGGUCGUUAGUCGGCAGUCAAUAUCUUGUGCAUUUCAAUAGUUCAUAUA____UU
..........((((((((...((((.(((..(....)..)))))))...(((.((((((...((.....))...)))))).)))....................))))))))........ (-32.32 = -32.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:32 2006