Locus 8485

Sequence ID X_DroMel_CAF1
Location 21,048,484 – 21,048,601
Length 117
Max. P 0.581231
window13961

overview

Window 1

Location 21,048,484 – 21,048,601
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -36.56
Consensus MFE -29.52
Energy contribution -29.92
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.581231
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21048484 117 - 22224390
UGGAUCCUCAAUGG---CGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGGACAUCGUGUCCCAGGU
.((((.....((((---.((..(((.....))).........(((((((((((...(((((....)))))....)))))))))))...)).))))...))))((((.....))))..... ( -34.60)
>DroSec_CAF1 18860 120 - 1
UGGAUCCUCAAUGGCGGCGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGGACAUCGUGUCCCAGGU
.((((....(((((.(((((..........))))))))))..(((((((((((...(((((....)))))....))))))))))).............))))((((.....))))..... ( -40.60)
>DroSim_CAF1 19427 120 - 1
UGGAUCCUCAAUGGCGGCGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGCACAUCGUGUCCCAGGU
.((......(((((.(((((..........))))))))))..(((((((((((...(((((....)))))....)))))))))))......))((((.(..(((.....)))..).)))) ( -37.70)
>DroEre_CAF1 19627 117 - 1
UCGAUCCUCAAUGG---CGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGGACAUCGUGUCCCAGGU
.....(((((((((---(((..........))))).......(((((((((((...(((((....)))))....))))))))))))))).............((((.....)))).))). ( -32.50)
>DroYak_CAF1 21476 117 - 1
UGGGAACUCAAUGG---CGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGGACAUCGUGUCCCAGGU
((((........((---(((..........))))).......(((((((((((...(((((....)))))....))))))))))).....)))).((((...((((.....)))))))). ( -37.40)
>consensus
UGGAUCCUCAAUGG___CGCUUCGCUUCGCGCGCCCCAUUUCUGUUGUAAGUGUAAUCAUCGCACGAUGAAAGCCGCUUACAAUAAUUGCCCCAUCUUGUCCGGACAUCGUGUCCCAGGU
(((......(((((...(((........)))....)))))..(((((((((((...(((((....)))))....)))))))))))......))).((((...((((.....)))))))). (-29.52 = -29.92 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:28 2006