Locus 8483

Sequence ID	X_DroMel_CAF1
Location	21,046,867 – 21,047,027
Length	160
Max. P	0.999566

overview

Window 8

Location	21,046,867 – 21,046,987
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	96.00
Mean single sequence MFE	-34.03
Consensus MFE	-31.00
Energy contribution	-31.60
Covariance contribution	0.60
Combinations/Pair	1.09
Mean z-score	-2.50
Structure conservation index	0.91
SVM decision value	3.73
SVM RNA-class probability	0.999566
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21046867 120 + 22224390
UAACCGCAAGUUGACAGAGUUUCCAGUCCGGAACCGGAGGUGGAGAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGGGCUGGAAUACUUAGGCCAAGGAAGGCCGCAAAAGCCAC
.....((((((((((.(((((((((.((((....))))..))))))))).)))))))................))).....((((..........((((......)))).....)))).. ( -34.75)
>DroSec_CAF1 17214 120 + 1
UAACCGCAAGUUGACAGAGUUUCCCGUCCGGAACCGGCGGUGGAGAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGUGCUGAAAUACUUAGGCCAAGGAAGGCCGCAAAAGCCAC
.....((.(((((((.((((((((((.(((....)))))..)))))))).)))))))................(((..(((((......))))).((((......)))))))...))... ( -34.70)
>DroSim_CAF1 17763 120 + 1
UAGCCGCAAGUUGACAGAGUUUCCCGUCCGGAACCGGCGGUGGAGAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGUGCUGAAAUACUUAGGCCAAGGAAGGCCGCAAAAGCCAC
.....((.(((((((.((((((((((.(((....)))))..)))))))).)))))))................(((..(((((......))))).((((......)))))))...))... ( -34.70)
>DroEre_CAF1 17886 120 + 1
CAACCGCAAGUUGACAGAGUUUCCAGCCCGGAACCGGCGGUGGAAAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGUGCUGAAAUACUUAGGCCAAGGAAGGCCGCAAAAGCCAC
.....((.(((((((.(((((((((.((((....))).).))))))))).)))))))................(((..(((((......))))).((((......)))))))...))... ( -38.00)
>DroYak_CAF1 19760 120 + 1
UAACCGCAAGUUGACAGAGUUUCGGGUCCGGAACCAGCGGUGGAGAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGUGCUGAAAUACUUAGGCCAAGGAGGGCCGCAAAAGCCAC
.....((.(((((((.(((((((.(..(((.......)))).))))))).)))))))................(((..(((((......))))).((((......)))))))...))... ( -28.00)
>consensus
UAACCGCAAGUUGACAGAGUUUCCAGUCCGGAACCGGCGGUGGAGAUUUAGUUAAUUAAAAUACAAUAAAAUAUGCAGAAGUGCUGAAAUACUUAGGCCAAGGAAGGCCGCAAAAGCCAC
.....((.(((((((.(((((((((.((((....))).).))))))))).)))))))................(((..(((((......))))).((((......)))))))...))... (-31.00 = -31.60 +   0.60)

alignment

secondary structure

dotplot

Window 9

Location	21,046,907 – 21,047,027
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	97.67
Mean single sequence MFE	-26.15
Consensus MFE	-24.60
Energy contribution	-25.00
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.16
Structure conservation index	0.94
SVM decision value	0.03
SVM RNA-class probability	0.547747
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21046907 120 - 22224390
AGUAAAGUUGAUCUAGUGCUAGUGAAUCCCCGGGCAUUUUGUGGCUUUUGCGGCCUUCCUUGGCCUAAGUAUUCCAGCCCUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUCUCCA
.....(((((((..(((((.((((((.....((((........((....))((((......))))...........))))..........)))))))))))...)))))))......... ( -26.56)
>DroSec_CAF1 17254 120 - 1
AGUAAAGUUGAUCCAGUGCUAGUGAAUCCCCGGGCAUUUUGUGGCUUUUGCGGCCUUCCUUGGCCUAAGUAUUUCAGCACUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUCUCCA
.....(((((((..((((((.(..((..(((((.....))).))..))..)((((......))))..........))))))..((((........)))).....)))))))......... ( -26.50)
>DroSim_CAF1 17803 120 - 1
AGUAAAGUUGAUCCAGUGCUAGUGAAUCCCCGGGCAUUUUGUGGCUUUUGCGGCCUUCCUUGGCCUAAGUAUUUCAGCACUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUCUCCA
.....(((((((..((((((.(..((..(((((.....))).))..))..)((((......))))..........))))))..((((........)))).....)))))))......... ( -26.50)
>DroEre_CAF1 17926 120 - 1
AGUAAAGUUGAUCCAGUGCUAGUGAAUUCCCUGGCAUUUUGUGGCUUUUGCGGCCUUCCUUGGCCUAAGUAUUUCAGCACUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUUUCCA
.....(((((((..((((((((.(....).))))))))..(((((....))((((......))))............)))...((((........)))).....)))))))......... ( -25.90)
>DroYak_CAF1 19800 120 - 1
AGUAAAGUUGAUCCAGUGCUAGUGAAUCCCCGGGCAUUUUGUGGCUUUUGCGGCCCUCCUUGGCCUAAGUAUUUCAGCACUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUCUCCA
.....(((((((..((((((.(..((..(((((.....))).))..))..)((((......))))..........))))))..((((........)))).....)))))))......... ( -25.30)
>consensus
AGUAAAGUUGAUCCAGUGCUAGUGAAUCCCCGGGCAUUUUGUGGCUUUUGCGGCCUUCCUUGGCCUAAGUAUUUCAGCACUUCUGCAUAUUUUAUUGUAUUUUAAUUAACUAAAUCUCCA
.....(((((((..((((((.(..((..(((((.....))).))..))..)((((......))))..........))))))..((((........)))).....)))))))......... (-24.60 = -25.00 +   0.40)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:27 2006