Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,411,880 – 2,411,973 |
Length | 93 |
Max. P | 0.990469 |
Location | 2,411,880 – 2,411,973 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -17.04 |
Consensus MFE | -11.52 |
Energy contribution | -11.80 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.44 |
Structure conservation index | 0.68 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2411880 93 + 22224390 -CCUGUGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCACA--GCCGU--------CGCCAUCUCGACCACAUCUGUCCACUUCAC---CAU---UUU -...((((.((.......................(((((((......))))))--)..((--------((......))))......)).)))).....---...---... ( -19.60) >DroSim_CAF1 20233 93 + 1 -CCUGUGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCACA--GCCGU--------CCCCAUCUCGACCACAUCUGUCCACUUCAC---CAC---UUU -...((((.((.......................(((((((......))))))--)..((--------(........)))......)).)))).....---...---... ( -17.40) >DroEre_CAF1 57898 92 + 1 -CCUGUGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCACA--GCCA---------ACCCAUCUCGACCACAUCUGUCCACUUCAC---CAG---UUU -.(((((((........(((....)))........((((((......))))))--))))---------.........(((.......)))........---)))---... ( -17.00) >DroYak_CAF1 58025 105 + 1 UCCUGUGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCACA--GCCAUGUUCACAGUCCCAUCUCGACCACAUCUGUUCACUUCGCCAUCAG---UUU ..(((((((...............(((...((..(((((((......))))))--)...))...)))(((.......)))................)))).)))---... ( -20.40) >DroAna_CAF1 63386 79 + 1 -CCUGCGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCCCACAACUCU---------------------------GACCUUUCCAC---CACCAGACU -..((.((((.......(((...(((....)))..)))((.....))))))))....(((---------------------------(..........---...)))).. ( -10.82) >consensus _CCUGUGGCCAACUUAAACGUUCUUGUAAUCAAAUUGUGCCACUUGCGGCACA__GCCAU________CCCCAUCUCGACCACAUCUGUCCACUUCAC___CAC___UUU ....((((.((......(((....)))........((((((......)))))).................................)).))))................. (-11.52 = -11.80 + 0.28)
Location | 2,411,880 – 2,411,973 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -17.32 |
Energy contribution | -17.24 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.16 |
Mean z-score | -2.56 |
Structure conservation index | 0.59 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2411880 93 - 22224390 AAA---AUG---GUGAAGUGGACAGAUGUGGUCGAGAUGGCG--------ACGGC--UGUGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCACAGG- ...---...---.....((((((((.(((.(((.....))).--------))).)--))).))))..(((((.((((((((..((......)))))))))))))))...- ( -32.20) >DroSim_CAF1 20233 93 - 1 AAA---GUG---GUGAAGUGGACAGAUGUGGUCGAGAUGGGG--------ACGGC--UGUGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCACAGG- ...---(((---((.((.(((((...((((((((((.((...--------.))..--(((((((....))))))).)))))))))).....)))))..)).)))))...- ( -33.50) >DroEre_CAF1 57898 92 - 1 AAA---CUG---GUGAAGUGGACAGAUGUGGUCGAGAUGGGU---------UGGC--UGUGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCACAGG- ...---.((---((.((.(((((...((((((((((...((.---------...)--)((((((....))))))..)))))))))).....)))))..)).))))....- ( -26.20) >DroYak_CAF1 58025 105 - 1 AAA---CUGAUGGCGAAGUGAACAGAUGUGGUCGAGAUGGGACUGUGAACAUGGC--UGUGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCACAGGA ...---(((.((((.((.(((((...((((((((((...((.((((....)))))--)((((((....))))))..)))))))))).....)))))..)).))))))).. ( -34.20) >DroAna_CAF1 63386 79 - 1 AGUCUGGUG---GUGGAAAGGUC---------------------------AGAGUUGUGGGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCGCAGG- ...(((.((---((.....((((---------------------------(((.((((..((((....))))))))))))))).....(((......))).))))))).- ( -20.00) >consensus AAA___CUG___GUGAAGUGGACAGAUGUGGUCGAGAUGGGG________ACGGC__UGUGCCGCAAGUGGCACAAUUUGAUUACAAGAACGUUUAAGUUGGCCACAGG_ ...................................................((((.....))))...(((((.((((((((..((......))))))))))))))).... (-17.32 = -17.24 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:14 2006