Locus 8471

Sequence ID X_DroMel_CAF1
Location 21,034,907 – 21,035,001
Length 94
Max. P 0.832648
window13913

overview

Window 3

Location 21,034,907 – 21,035,001
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.02
Mean single sequence MFE -23.18
Consensus MFE -16.48
Energy contribution -17.08
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.71
SVM decision value 0.72
SVM RNA-class probability 0.832648
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21034907 94 - 22224390
UACUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGGAAAAACAAACUACUUCUCCUCCAU------UUCCGUUUGCCAUCCGC--------CUUUCCUAUUUUC------------
......(((((......(((((((......)))).(((((((...........)))))))....------....)))......))))--------)............------------ ( -22.30)
>DroSec_CAF1 5539 94 - 1
UACUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGGAAAAACAAACUACUUCUCCUCCAU------UUCCGUUUCCCAUCCGC--------CUUUCCUAUUUUC------------
......(((((......(((((((......)))).(((((((...........)))))))....------....)))......))))--------)............------------ ( -22.30)
>DroSim_CAF1 6088 94 - 1
UACUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGGAAAAACAAACUACUUCUCCUCCAU------UUCCGUUUCCCAUCCGC--------CUUUCCUAUUUUC------------
......(((((......(((((((......)))).(((((((...........)))))))....------....)))......))))--------)............------------ ( -22.30)
>DroEre_CAF1 5686 120 - 1
UGCUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGCAAGAACGAACUACUGCUCCUCCAUUUCCAUUUCCGUUUCCCAUCCGCUUUUCCGCCUUUCCUAGUUUCCAUGAAAAUGGG
......(((((......(((((((......))))..(((...(((((..........................))))))))....)))...)))))...........((((....)))). ( -28.27)
>DroYak_CAF1 6130 102 - 1
UGCUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGCAAGAACGAACUACUUCUCCUCCAU------UUCCGUUUCCCAUCCGCUUUUCCGCUUUUCCUAUUUUC------------
......(((((......(((((((......))))..(((...(((((.................------...))))))))....)))...)))))............------------ ( -20.75)
>consensus
UACUUUGGCGGCUCAUUAGCGGGUCACCGUACCCUAGGGGAAAAACAAACUACUUCUCCUCCAU______UUCCGUUUCCCAUCCGC________CUUUCCUAUUUUC____________
.......((((......((((((............(((((((...........)))))))...........))))))......))))................................. (-16.48 = -17.08 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:47 2006